Complete chloroplast genome sequence of the wild diploid potato relative, Solanum acaule

Solanum acaule is a wild tuber-bearing species classified in the Solanaceae. The complete chloroplast genome of S. acaule was constructed by de novo assembly using Illumina paired-end (PE) sequencing data. The chloroplast genome of S. acaule is circular and has a length of 155,570 bp and typical qua...

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Bibliographic Details
Published inMitochondrial DNA. Part B. Resources Vol. 6; no. 3; pp. 1189 - 1191
Main Author Park, Tae-Ho
Format Journal Article
LanguageEnglish
Published England Taylor & Francis 26.03.2021
Taylor & Francis Ltd
Taylor & Francis Group
Subjects
Chloroplast
Chloroplasts
Diploids
genome
genome sequence
Genomes
Inverted repeat
Mitogenome Announcement
Nucleotide sequence
Phylogeny
rRNA
Solanaceae
Solanum acaule
Species
tRNA
genome
genome sequence
Chloroplast
Solanum acaule
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Summary:Solanum acaule is a wild tuber-bearing species classified in the Solanaceae. The complete chloroplast genome of S. acaule was constructed by de novo assembly using Illumina paired-end (PE) sequencing data. The chloroplast genome of S. acaule is circular and has a length of 155,570 bp and typical quadripartite consisting of 86,020 bp of large single copy, 18,364 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis of the sequence with 31 species in the Solanaceae revealed that S. acaule is fully resolved in a large clade with nine other Solanum species including S. tuberosum.
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ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2021.1902414