Genetic diversity of Elaeis oleifera (HBK) Cortes populations using cross species SSRs: implication's for germplasm utilization and conservation

• Published in: BMC genetics Vol. 18; no. 1; p. 37
• Main Authors: Ithnin, Maizura, Teh, Chee-Keng, Ratnam, Wickneswari
• Format: Journal Article
• Language: English
• Published: England BioMed Central 19.04.2017; BMC
• Subjects: Arecaceae - genetics; Bioinformatics; Conservation; Conserved Sequence; Elaeis oleifera; Genetic diversity; Genetic Variation; Genomes; Germplasm; Germplasm conservation; Germplasm utilization; Microsatellite Repeats - genetics; Microsatellites; Phylogeny; Population; Population structure; Seeds; Software; Species; Species Specificity; Vegetable oils; Colombia; Honduras; Panama; Costa Rica; Germplasm utilization; Population structure; Germplasm conservation; Microsatellites; Elaeis oleifera
• ISSN: 1471-2156; 1471-2156
• DOI: 10.1186/s12863-017-0505-7

The Elaeis oleifera genetic materials were assembled from its center of diversity in South and Central America. These materials are currently being preserved in Malaysia as ex situ living collections. Maintaining such collections is expensive and requires sizable land. Information on the genetic diversity of these collections can help achieve efficient conservation via maintenance of core collection. For this purpose, we have applied fourteen unlinked microsatellite markers to evaluate 532 E. oleifera palms representing 19 populations distributed across Honduras, Costa Rica, Panama and Colombia. In general, the genetic diversity decreased from Costa Rica towards the north (Honduras) and south-east (Colombia). Principle coordinate analysis (PCoA) showed a single cluster indicating low divergence among palms. The phylogenetic tree and STRUCTURE analysis revealed clusters based on country of origin, indicating considerable gene flow among populations within countries. Based on the values of the genetic diversity parameters, some genetically diverse populations could be identified. Further, a total of 34 individual palms that collectively captured maximum allelic diversity with reduced redundancy were also identified. High pairwise genetic differentiation (Fst > 0.250) among populations was evident, particularly between the Colombian populations and those from Honduras, Panama and Costa Rica. Crossing selected palms from highly differentiated populations could generate off-springs that retain more genetic diversity. The results attained are useful for selecting palms and populations for core collection. The selected materials can also be included into crossing scheme to generate offsprings that capture greater genetic diversity for selection gain in the future.