Global analysis of protein lysine succinylation profiles in common wheat

• Published in: BMC genomics Vol. 18; no. 1; p. 309
• Main Authors: Zhang, Yumei, Wang, Guangyuan, Song, Limin, Mu, Ping, Wang, Shu, Liang, Wenxing, Lin, Qi
• Format: Journal Article
• Language: English
• Published: England BioMed Central 20.04.2017; BMC
• Subjects: Acetylation; Bioinformatics; Biological activity; Carbon Cycle; Carbon fixation; Cereal crops; Comparative analysis; Eukaryotes; Genomics; Lysine; Lysine - metabolism; Lysine succinylation; Mass spectrometry; Metabolism; Molecular Sequence Annotation; Network analysis; Peptides; Photosynthesis; Plant Proteins - chemistry; Plant Proteins - genetics; Plant Proteins - metabolism; Post-translation; Post-translational modification; Prokaryotes; Protein Processing, Post-Translational; Protein Structure, Secondary; Protein Transport; Proteins; Proteomics; Scientific imaging; Software; Succinic Acid - metabolism; Succinylome; Triticum - cytology; Triticum - genetics; Triticum - metabolism; Triticum aestivum; Triticum aestivum L; Wheat; Post-translational modification; Triticum aestivum L; Lysine succinylation; Photosynthesis; Succinylome
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-017-3698-2

Protein lysine succinylation is an important post-translational modification and plays a critical regulatory role in almost every aspects of cell metabolism in both eukaryotes and prokaryotes. Common wheat is one of the major global cereal crops. However, to date, little is known about the functions of lysine succinylation in this plant. Here, we performed a global analysis of lysine succinylation in wheat and examined its overlap with lysine acetylation. In total, 330 lysine succinylated modification sites were identified in 173 proteins. Bioinformatics analysis showed that the modified proteins are distributed in multiple subcellular compartments and are involved in a wide variety of biological processes such as photosynthesis and the Calvin-Benson cycle, suggesting an important role for lysine succinylation in these processes. Five putative succinylation motifs were identified. A protein interaction network analysis revealed that diverse interactions are modulated by protein succinylation. Moreover, 21 succinyl-lysine sites were found to be acetylated at the same position, and 33 proteins were modified by both acetylation and succinylation, suggesting an extensive overlap between succinylation and acetylation in common wheat. Comparative analysis indicated that lysine succinylation is conserved between common wheat and Brachypodium distachyon. These results suggest that lysine succinylation is involved in diverse biological processes, especially in photosynthesis and carbon fixation. This systematic analysis represents the first global analysis of lysine succinylation in common wheat and provides an important resource for exploring the physiological role of lysine succinylation in this cereal crop and likely in all plants.