Uncovering the Gene Regulatory Network of Endothelial Cells in Mouse Duchenne Muscular Dystrophy: Insights from Single-Nuclei RNA Sequencing Analysis

• Published in: Biology (Basel, Switzerland) Vol. 12; no. 3; p. 422
• Main Authors: Shen, Yan, Kim, Il-Man, Hamrick, Mark, Tang, Yaoliang
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 01.03.2023; MDPI
• Subjects: Analysis; cell metabolism; Collagen; Cyclin-dependent kinases; Datasets; Duchenne muscular dystrophy; Duchenne's muscular dystrophy; Dystrophin; Endothelial cells; Endothelium; Folic acid; Gene expression; Genes; Genetic aspects; Glycolysis; Heart failure; Hereditary diseases; Kinases; Laboratories; Metabolic pathways; Metabolism; Muscles; Muscular dystrophy; Musculoskeletal system; Mutants; Mutation; Non-coding RNA; Ontology; Oxidative phosphorylation; Phosphorylation; Pyruvic acid; RNA; RNA polymerase; RNA sequencing; Sequence analysis; single-nuclear RNA sequencing (snRNA-seq); Skeletal muscle; skeletal muscle-derived endothelial cells; snRNA; Software; Transcription factors; Transcriptomics; Trimers; Utrophin; cell metabolism; dystrophin; skeletal muscle-derived endothelial cells; single-nuclear RNA sequencing (snRNA-seq); Duchenne muscular dystrophy
• ISSN: 2079-7737; 2079-7737
• DOI: 10.3390/biology12030422

Duchenne muscular dystrophy (DMD) is a severe X-linked recessive disorder caused by mutations in the gene, which leads to heart and respiratory failure. Despite the critical impact of DMD on endothelial cells (ECs), there is limited understanding of its effect on the endothelial gene network. The aim of this study was to investigate the impact of DMD on the gene regulatory network of ECs. To gain insights into the role of the gene ( ) in ECs from Duchenne muscular dystrophy; the study utilized single-nuclei RNA sequencing (snRNA-seq) to evaluate the transcriptomic profile of ECs from skeletal muscles in mutant mice ( ) and wild-type control mice. The analysis showed that the mutation resulted in the suppression of several genes, including SPTBN1 and the upregulation of multiple long noncoding RNAs (lncRNAs). GM48099, GM19951, and GM15564 were consistently upregulated in ECs and skeletal muscle cells from , indicating that these dysregulated lncRNAs are conserved across different cell types. Gene ontology (GO) enrichment analysis revealed that the mutation activated the following four pathways in ECs: fibrillary collagen trimer, banded collagen fibril, complex of collagen trimers, and purine nucleotide metabolism. The study also found that the metabolic pathway activity of ECs was altered. Oxidative phosphorylation (OXPHOS), fatty acid degradation, glycolysis, and pyruvate metabolism were decreased while purine metabolism, pyrimidine metabolism, and one carbon pool by folate were increased. Moreover, the study investigated the impact of the mutation on ECs from skeletal muscles and found a significant decrease in their overall number, but no change in their proliferation. Overall, this study provides new insights into the gene regulatory program in ECs in and highlights the importance of further research in this area.