Toolbox Accelerating Glycomics (TAG): Improving Large-Scale Serum Glycomics and Refinement to Identify SALSA-Modified and Rare Glycans

• Published in: International journal of molecular sciences Vol. 23; no. 21; p. 13097
• Main Authors: Miura, Nobuaki, Hanamatsu, Hisatoshi, Yokota, Ikuko, Akasaka-Manya, Keiko, Manya, Hiroshi, Endo, Tamao, Shinohara, Yasuro, Furukawa, Jun-Ichi
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 28.10.2022; MDPI
• Subjects: Acids; calibration curve; Cellular structure; Glycan; glycomics; Glycomics - methods; Humans; Informatics; large-scale analysis; Linkages; MALDI-TOF-MS; Mass Spectrometry; Mass spectroscopy; Morphogenesis; N-Acetylneuraminic Acid; Polysaccharides; Polysaccharides - chemistry; Proteins; Quantitation; Scientific imaging; semiautomatic analysis; serum; Sialic acids; Sialic Acids - chemistry; Software upgrading; calibration curve; MALDI-TOF-MS; glycomics; large-scale analysis; cohort; serum; semiautomatic analysis
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms232113097

Glycans are involved in many fundamental cellular processes such as growth, differentiation, and morphogenesis. However, their broad structural diversity makes analysis difficult. Glycomics via mass spectrometry has focused on the composition of glycans, but informatics analysis has not kept pace with the development of instrumentation and measurement techniques. We developed Toolbox Accelerating Glycomics (TAG), in which glycans can be added manually to the glycan list that can be freely designed with labels and sialic acid modifications, and fast processing is possible. In the present work, we improved TAG for large-scale analysis such as cohort analysis of serum samples. The sialic acid linkage-specific alkylamidation (SALSA) method converts differences in linkages such as α2,3- and α2,6-linkages of sialic acids into differences in mass. Glycans modified by SALSA and several structures discovered in recent years were added to the glycan list. A routine to generate calibration curves has been implemented to explore quantitation. These improvements are based on redefinitions of residues and glycans in the TAG List to incorporate information on glycans that could not be attributed because it was not assumed in the previous version of TAG. These functions were verified through analysis of purchased sera and 74 spectra with linearity at the level of R2 > 0.8 with 81 estimated glycan structures obtained including some candidate of rare glycans such as those with the N,N’-diacetyllactosediamine structure, suggesting they can be applied to large-scale analyses.