Pathway studio—the analysis and navigation of molecular networks

• Published in: Bioinformatics Vol. 19; no. 16; pp. 2155 - 2157
• Main Authors: Nikitin, Alexander, Egorov, Sergei, Daraselia, Nikolai, Mazo, Ilya
• Format: Journal Article
• Language: English
• Published: Oxford Oxford University Press 01.11.2003; Oxford Publishing Limited (England)
• Subjects: Biological and medical sciences; Database Management Systems; Databases, Protein; Fundamental and applied biological sciences. Psychology; Gene Expression Regulation - physiology; General aspects; Information Storage and Retrieval - methods; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects); Metabolism - physiology; Models, Biological; Protein Interaction Mapping - methods; Software; User-Computer Interface; Language processing; Gene interaction; Network analysis; Network; Database; Software; Small molecule; Protein
• ISSN: 1367-4803; 1460-2059; 1367-4811
• DOI: 10.1093/bioinformatics/btg290

PathwayAssist is a software application developed for navigation and analysis of biological pathways, gene regulation networks and protein interaction maps. It comes with the built-in natural language processing module MedScan and the comprehensive database describing more than 100 000 events of regulation, interaction and modification between proteins, cell processes and small molecules. Availability: PathwayAssist is available for commercial licensing from Ariadne Genomics, Inc. The light version with limited functionality will be available for free for academic users at www.ariadnegenomics.com/downloads/