The DynDom database of protein domain motions

• Published in: Bioinformatics Vol. 19; no. 10; pp. 1290 - 1291
• Main Authors: Lee, Richard A., Razaz, Moe, Hayward, Steven
• Format: Journal Article
• Language: English
• Published: Oxford Oxford University Press 01.07.2003; Oxford Publishing Limited (England)
• Subjects: Biological and medical sciences; Crystallography - methods; Databases, Protein; Fundamental and applied biological sciences. Psychology; General aspects; Information Storage and Retrieval - methods; Internet; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects); Models, Molecular; Protein Conformation; Protein Structure, Tertiary; Proteins - chemistry; Sequence Alignment - methods; Sequence Analysis, Protein - methods; User-Computer Interface; Computer program; Three dimensional structure; Graphical interface; Database; Web site; Bioinformatics; X ray diffraction; Protein Data Bank; Protein; Conformation
• ISSN: 1367-4803; 1460-2059; 1367-4811
• DOI: 10.1093/bioinformatics/btg137

A relational database has been developed based on the results from the application of the DynDom program to a number of proteins for which multiple X-ray conformers are available. The database is populated via a web-based tool that allows visitors to the website to run the DynDom program server-side by selecting pairs of X-ray conformers by Protein Data Bank code and chain identifier. Availability: The website can be found at: http://www.sys.uea.ac.uk/dyndom Contact: sjh@sys.uea.ac.uk * To whom correspondence should be addressed.