Database resources for the tuberculosis community

• Published in: Tuberculosis (Edinburgh, Scotland) Vol. 93; no. 1; pp. 12 - 17
• Main Authors: Lew, Jocelyne M, Mao, Chunhong, Shukla, Maulik, Warren, Andrew, Will, Rebecca, Kuznetsov, Dmitry, Xenarios, Ioannis, Robertson, Brian D, Gordon, Stephen V, Schnappinger, Dirk, Cole, Stewart T, Sobral, Bruno
• Format: Journal Article
• Language: English
• Published: Scotland Elsevier Ltd 01.01.2013
• Subjects: Databases, Genetic; Genome, Bacterial; Genomics; Humans; Infectious Disease; Integration; Internet; Mycobacterium; Mycobacterium tuberculosis - genetics; Pathogens; PATRIC; Pulmonary/Respiratory; Reviews; TB database; TubercuList; Tuberculosis; Tuberculosis - microbiology; Database; TubercuList; TB database; PATRIC; Genomics
• ISSN: 1472-9792; 1873-281X
• DOI: 10.1016/j.tube.2012.11.003

Summary Access to online repositories for genomic and associated “-omics” datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th–8th 2012, was therefore to provide an overview of the current status of three key Tuberculosis resources, TubercuList ( tuberculist.epfl.ch ), TB Database ( www.tbdb.org ), and Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org ). Here we summarize some key updates and upcoming features in TubercuList, and provide an overview of the PATRIC site and its online tools for pathogen RNA-Seq analysis.