GSDS 2.0: an upgraded gene feature visualization server

Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a ne...

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Published in	Bioinformatics Vol. 31; no. 8; pp. 1296 - 1297
Main Authors	Hu, Bo, Jin, Jinpu, Guo, An-Yuan, Zhang, He, Luo, Jingchu, Gao, Ge
Format	Journal Article
Language	English
Published	England Oxford University Press 15.04.2015
Subjects	Applications Notes Bioinformatics Biologists Editing Evolutionary Format Genes Genes - genetics Genomics - methods Humans Internet Molecular Sequence Annotation - methods Phylogeny Servers Software Source code User-Computer Interface
Online Access	Get full text
ISSN	1367-4803 1367-4811 1367-4811 1460-2059
DOI	10.1093/bioinformatics/btu817

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Abstract	Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. Contact: gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online.
AbstractList	Summary : Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Availability and implementation : Web server and source code are freely available at http://gsds.cbi.pku.edu.cn . Contact : gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary information : Supplementary data are available at Bioinformatics online. Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. Supplementary information: Supplementary data are available at Bioinformatics online. : Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.UNLABELLED: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.AVAILABILITY AND IMPLEMENTATIONWeb server and source code are freely available at http://gsds.cbi.pku.edu.cn.gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cnCONTACTgaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cnSupplementary data are available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary data are available at Bioinformatics online. : Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary data are available at Bioinformatics online. Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. Contact: gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online.
Author	Hu, Bo Luo, Jingchu Guo, An-Yuan Gao, Ge Zhang, He Jin, Jinpu
Author_xml	– sequence: 1 givenname: Bo surname: Hu fullname: Hu, Bo – sequence: 2 givenname: Jinpu surname: Jin fullname: Jin, Jinpu – sequence: 3 givenname: An-Yuan surname: Guo fullname: Guo, An-Yuan – sequence: 4 givenname: He surname: Zhang fullname: Zhang, He – sequence: 5 givenname: Jingchu surname: Luo fullname: Luo, Jingchu – sequence: 6 givenname: Ge surname: Gao fullname: Gao, Ge
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/25504850$$D View this record in MEDLINE/PubMed
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ContentType	Journal Article
Copyright	The Author 2014. Published by Oxford University Press. The Author 2014. Published by Oxford University Press. 2014
Copyright_xml	– notice: The Author 2014. Published by Oxford University Press. – notice: The Author 2014. Published by Oxford University Press. 2014
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Snippet	Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server... : Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display... Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server... Summary : Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure...
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Title	GSDS 2.0: an upgraded gene feature visualization server
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