Toward Automatic Model Comparison: An Adaptive Sequential Monte Carlo Approach

• Published in: Journal of computational and graphical statistics Vol. 25; no. 3; pp. 701 - 726
• Main Authors: Zhou, Yan, Johansen, Adam M., Aston, John A.D.
• Format: Journal Article
• Language: English
• Published: Alexandria Taylor & Francis 02.07.2016; American Statistical Association, Institute of Mathematical Statistics, and Interface Foundation of North America; Taylor & Francis Ltd
• Subjects: Adaptive Monte Carlo algorithms; Algorithms; Bayesian analysis; Bayesian model comparison; Bayesian Statistics; Monte Carlo simulation; Normalizing constants; Path sampling; Probability distribution; Sampling techniques; Studies; Thermodynamic integration
• ISSN: 1061-8600; 1537-2715
• DOI: 10.1080/10618600.2015.1060885

Model comparison for the purposes of selection, averaging, and validation is a problem found throughout statistics. Within the Bayesian paradigm, these problems all require the calculation of the posterior probabilities of models within a particular class. Substantial progress has been made in recent years, but difficulties remain in the implementation of existing schemes. This article presents adaptive sequential Monte Carlo (SMC) sampling strategies to characterize the posterior distribution of a collection of models, as well as the parameters of those models. Both a simple product estimator and a combination of SMC and a path sampling estimator are considered and existing theoretical results are extended to include the path sampling variant. A novel approach to the automatic specification of distributions within SMC algorithms is presented and shown to outperform the state of the art in this area. The performance of the proposed strategies is demonstrated via an extensive empirical study. Comparisons with state-of-the-art algorithms show that the proposed algorithms are always competitive, and often substantially superior to alternative techniques, at equal computational cost and considerably less application-specific implementation effort. Supplementary materials for this article are available online.