Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange

Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we...

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Published inNature communications Vol. 15; no. 1; p. 3477
Main Authors Xie, Ouli, Zachreson, Cameron, Tonkin-Hill, Gerry, Price, David J., Lacey, Jake A., Morris, Jacqueline M., McDonald, Malcolm I., Bowen, Asha C., Giffard, Philip M., Currie, Bart J., Carapetis, Jonathan R., Holt, Deborah C., Bentley, Stephen D., Davies, Mark R., Tong, Steven Y. C.
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Published London Nature Publishing Group UK 24.04.2024
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Abstract Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts. Streptococcus dysgalactiae subsp. equisimilis is closely related to Streptococcus pyogenes and colonises the same sites in humans. This study examines cross-species transmission interactions and genetic exchange in a high disease burden setting.
AbstractList Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts.
Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts.Streptococcus dysgalactiae subsp. equisimilis is closely related to Streptococcus pyogenes and colonises the same sites in humans. This study examines cross-species transmission interactions and genetic exchange in a high disease burden setting.
Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts. Streptococcus dysgalactiae subsp. equisimilis is closely related to Streptococcus pyogenes and colonises the same sites in humans. This study examines cross-species transmission interactions and genetic exchange in a high disease burden setting.
Abstract Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts.
Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts.
ArticleNumber 3477
Author Morris, Jacqueline M.
McDonald, Malcolm I.
Bowen, Asha C.
Price, David J.
Lacey, Jake A.
Currie, Bart J.
Tong, Steven Y. C.
Davies, Mark R.
Tonkin-Hill, Gerry
Carapetis, Jonathan R.
Holt, Deborah C.
Zachreson, Cameron
Giffard, Philip M.
Bentley, Stephen D.
Xie, Ouli
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Cites_doi 10.1371/journal.pone.0288016
10.1017/S095026881800064X
10.1038/s41467-024-46530-2
10.3389/fmicb.2014.00687
10.1099/mic.0.28823-0
10.1093/molbev/msaa015
10.1093/infdis/jix637
10.21105/joss.04910
10.1101/gr.241455.118
10.5694/mja2.51117
10.12688/wellcomeopenres.14826.1
10.1371/journal.ppat.1000651
10.1093/bioinformatics/bts565
10.1186/s13059-019-1891-0
10.1016/S0140-6736(00)02765-3
10.3201/eid2902.221218
10.1038/s41467-022-28156-4
10.1086/506938
10.1097/INF.0b013e318194b2af
10.1093/bioinformatics/btu153
10.1038/s41564-022-01238-1
10.1093/nar/gkad344
10.3201/eid2811.220029
10.3389/fmicb.2014.00676
10.3201/eid1311.061258
10.1128/jcm.35.1.1-4.1997
10.1093/bioinformatics/btab705
10.1086/432514
10.1017/S0950268815002010
10.1371/journal.pone.0011741
10.1093/molbev/msx281
10.1186/s13059-020-02090-4
10.1093/bioinformatics/bty633
10.1093/nar/gkac163
10.1086/605085
10.5694/mja16.00400
10.1002/cpbi.102
10.3201/eid2202.141732
10.1038/srep36233
10.1038/s41588-019-0417-8
10.1016/S2666-5247(23)00068-X
10.1101/453142
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References Sumby (CR22) 2005; 192
Lees (CR31) 2019; 29
Haidan (CR7) 2000; 356
Xie (CR13) 2024; 15
CR17
Wajima (CR10) 2016; 22
CR38
Boyd (CR3) 2016; 144
Brandt, Spellerberg (CR1) 2009; 49
Steer (CR23) 2009; 28
Davies (CR33) 2019; 51
Tonkin-Hill (CR34) 2020; 21
Belotserkovsky (CR14) 2009; 5
McDonald, Towers, Andrews, Carapetis, Currie (CR18) 2007; 13
Sikder (CR8) 2017; 218
Tonkin-Hill (CR26) 2022; 7
Jose (CR24) 2018; 146
Iannelli (CR21) 2014; 5
Higgs (CR39) 2022; 13
Wright (CR6) 2022; 28
Oppegaard (CR9) 2023; 29
Fu, Niu, Zhu, Wu, Li (CR40) 2012; 28
Jespersen, Hayes, Davies (CR35) 2022; 7
Wright (CR4) 2021; 215
Khedkar (CR20) 2022; 50
Prjibelski, Antipov, Meleshko, Lapidus, Korobeynikov (CR27) 2020; 70
Jolley, Bray, Maiden (CR30) 2018; 3
Armstrong (CR15) 2016; 6
Heng (CR16) 2006; 152
Blin (CR32) 2023; 51
Wiegele (CR2) 2023; 18
McNeilly, McMillan (CR12) 2014; 5
McDonald (CR19) 2006; 43
Wood, Lu, Langmead (CR29) 2019; 20
Turner, Hayden, Lobo, Ramirez, Murren (CR25) 1997; 35
Li (CR41) 2021; 37
McMillan (CR11) 2010; 5
Seemann (CR28) 2014; 30
Hoang, Chernomor, von Haeseler, Minh, Vinh (CR37) 2018; 35
Paradis, Schliep (CR42) 2019; 35
May, Bowen, Carapetis (CR5) 2016; 205
Minh (CR36) 2020; 37
K Blin (47816_CR32) 2023; 51
F Iannelli (47816_CR21) 2014; 5
JC Turner (47816_CR25) 1997; 35
AC Steer (47816_CR23) 2009; 28
47816_CR17
CM Wright (47816_CR6) 2022; 28
DT Hoang (47816_CR37) 2018; 35
47816_CR38
C Higgs (47816_CR39) 2022; 13
G Tonkin-Hill (47816_CR26) 2022; 7
S Khedkar (47816_CR20) 2022; 50
I Belotserkovsky (47816_CR14) 2009; 5
P Sumby (47816_CR22) 2005; 192
L Fu (47816_CR40) 2012; 28
R Boyd (47816_CR3) 2016; 144
T Seemann (47816_CR28) 2014; 30
PJ May (47816_CR5) 2016; 205
DE Wood (47816_CR29) 2019; 20
MG Jespersen (47816_CR35) 2022; 7
A Prjibelski (47816_CR27) 2020; 70
BD Armstrong (47816_CR15) 2016; 6
M McDonald (47816_CR18) 2007; 13
MR Davies (47816_CR33) 2019; 51
G Tonkin-Hill (47816_CR34) 2020; 21
BQ Minh (47816_CR36) 2020; 37
CM Wright (47816_CR4) 2021; 215
MI McDonald (47816_CR19) 2006; 43
T Wajima (47816_CR10) 2016; 22
O Xie (47816_CR13) 2024; 15
CM Brandt (47816_CR1) 2009; 49
DJ McMillan (47816_CR11) 2010; 5
S Wiegele (47816_CR2) 2023; 18
O Oppegaard (47816_CR9) 2023; 29
JJM Jose (47816_CR24) 2018; 146
JA Lees (47816_CR31) 2019; 29
H Li (47816_CR41) 2021; 37
CL McNeilly (47816_CR12) 2014; 5
A Haidan (47816_CR7) 2000; 356
E Paradis (47816_CR42) 2019; 35
KA Jolley (47816_CR30) 2018; 3
S Sikder (47816_CR8) 2017; 218
NCK Heng (47816_CR16) 2006; 152
References_xml – volume: 18
  start-page: e0288016
  year: 2023
  ident: CR2
  article-title: The epidemiology of superficial streptococcal A (impetigo and pharyngitis) infections in Australia: a systematic review
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0288016
  contributor:
    fullname: Wiegele
– volume: 146
  start-page: 848
  year: 2018
  end-page: 853
  ident: CR24
  article-title: Streptococcal group A, C and G pharyngitis in school children: a prospective cohort study in Southern India
  publication-title: Epidemiol. Infect.
  doi: 10.1017/S095026881800064X
  contributor:
    fullname: Jose
– volume: 15
  year: 2024
  ident: CR13
  article-title: Inter-species gene flow drives ongoing evolution of and subsp.
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-024-46530-2
  contributor:
    fullname: Xie
– volume: 5
  start-page: 687
  year: 2014
  ident: CR21
  article-title: Nucleotide sequence of conjugative prophage Φ1207.3 (formerly Tn1207.3) carrying the mef(A)/msr(D) genes for efflux resistance to macrolides in Streptococcus pyogenes
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2014.00687
  contributor:
    fullname: Iannelli
– volume: 152
  start-page: 1991
  year: 2006
  end-page: 2001
  ident: CR16
  article-title: Dysgalacticin: a novel, plasmid-encoded antimicrobial protein (bacteriocin) produced by Streptococcus dysgalactiae subsp. equisimilis
  publication-title: Microbiology
  doi: 10.1099/mic.0.28823-0
  contributor:
    fullname: Heng
– volume: 37
  start-page: 1530
  year: 2020
  end-page: 1534
  ident: CR36
  article-title: IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msaa015
  contributor:
    fullname: Minh
– volume: 218
  start-page: 324
  year: 2017
  end-page: 335
  ident: CR8
  article-title: Group G induces an autoimmune carditis mediated by interleukin 17A and interferon γ in the Lewis rat model of rheumatic heart disease
  publication-title: J. Infect. Dis.
  doi: 10.1093/infdis/jix637
  contributor:
    fullname: Sikder
– volume: 7
  start-page: 4910
  year: 2022
  ident: CR35
  article-title: Corekaburra: pan-genome post-processing using core gene synteny
  publication-title: J. Open Source Softw.
  doi: 10.21105/joss.04910
  contributor:
    fullname: Davies
– volume: 29
  start-page: 304
  year: 2019
  end-page: 316
  ident: CR31
  article-title: Fast and flexible bacterial genomic epidemiology with PopPUNK
  publication-title: Genome Res.
  doi: 10.1101/gr.241455.118
  contributor:
    fullname: Lees
– volume: 215
  start-page: 36
  year: 2021
  end-page: 41
  ident: CR4
  article-title: Increasing incidence of invasive group A streptococcal disease in Western Australia, particularly among Indigenous people
  publication-title: Med. J. Aust.
  doi: 10.5694/mja2.51117
  contributor:
    fullname: Wright
– volume: 3
  start-page: 124
  year: 2018
  ident: CR30
  article-title: Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications
  publication-title: Wellcome Open Res.
  doi: 10.12688/wellcomeopenres.14826.1
  contributor:
    fullname: Maiden
– volume: 5
  start-page: e1000651
  year: 2009
  ident: CR14
  article-title: Functional analysis of the quorum-sensing streptococcal invasion locus (sil)
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000651
  contributor:
    fullname: Belotserkovsky
– volume: 28
  start-page: 3150
  year: 2012
  end-page: 3152
  ident: CR40
  article-title: CD-HIT: accelerated for clustering the next-generation sequencing data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts565
  contributor:
    fullname: Li
– volume: 20
  year: 2019
  ident: CR29
  article-title: Improved metagenomic analysis with Kraken 2
  publication-title: Genome Biol.
  doi: 10.1186/s13059-019-1891-0
  contributor:
    fullname: Langmead
– volume: 356
  start-page: 1167
  year: 2000
  end-page: 1169
  ident: CR7
  article-title: Pharyngeal carriage of group C and group G streptococci and acute rheumatic fever in an Aboriginal population
  publication-title: Lancet
  doi: 10.1016/S0140-6736(00)02765-3
  contributor:
    fullname: Haidan
– volume: 29
  start-page: 260
  year: 2023
  end-page: 267
  ident: CR9
  article-title: bloodstream infections, Norway, 1999-2021
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2902.221218
  contributor:
    fullname: Oppegaard
– volume: 13
  year: 2022
  ident: CR39
  article-title: Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-022-28156-4
  contributor:
    fullname: Higgs
– volume: 43
  start-page: 683
  year: 2006
  end-page: 689
  ident: CR19
  article-title: Low rates of streptococcal pharyngitis and high rates of pyoderma in Australian aboriginal communities where acute rheumatic fever is hyperendemic
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/506938
  contributor:
    fullname: McDonald
– volume: 28
  start-page: 477
  year: 2009
  end-page: 482
  ident: CR23
  article-title: Prospective surveillance of streptococcal sore throat in a tropical country
  publication-title: Pediatr. Infect. Dis. J.
  doi: 10.1097/INF.0b013e318194b2af
  contributor:
    fullname: Steer
– volume: 30
  start-page: 2068
  year: 2014
  end-page: 2069
  ident: CR28
  article-title: Prokka: rapid prokaryotic genome annotation
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu153
  contributor:
    fullname: Seemann
– volume: 7
  start-page: 1791
  year: 2022
  end-page: 1804
  ident: CR26
  article-title: Pneumococcal within-host diversity during colonization, transmission and treatment
  publication-title: Nat. Microbiol.
  doi: 10.1038/s41564-022-01238-1
  contributor:
    fullname: Tonkin-Hill
– volume: 51
  start-page: W46
  year: 2023
  end-page: w50
  ident: CR32
  article-title: antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkad344
  contributor:
    fullname: Blin
– volume: 28
  start-page: 2190
  year: 2022
  end-page: 2197
  ident: CR6
  article-title: Invasive infections caused by lancefield groups C/G and A , Western Australia, Australia, 2000-2018
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2811.220029
  contributor:
    fullname: Wright
– volume: 5
  start-page: 676
  year: 2014
  ident: CR12
  article-title: Horizontal gene transfer and recombination in subsp.
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2014.00676
  contributor:
    fullname: McMillan
– volume: 13
  start-page: 1694
  year: 2007
  end-page: 1700
  ident: CR18
  article-title: Epidemiology of subsp. in tropical communities, Northern Australia
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid1311.061258
  contributor:
    fullname: Currie
– volume: 35
  start-page: 1
  year: 1997
  end-page: 4
  ident: CR25
  article-title: Epidemiologic evidence for Lancefield group C beta-hemolytic streptococci as a cause of exudative pharyngitis in college students
  publication-title: J. Clin. Microbiol.
  doi: 10.1128/jcm.35.1.1-4.1997
  contributor:
    fullname: Murren
– volume: 37
  start-page: 4572
  year: 2021
  end-page: 4574
  ident: CR41
  article-title: New strategies to improve minimap2 alignment accuracy
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btab705
  contributor:
    fullname: Li
– volume: 192
  start-page: 771
  year: 2005
  end-page: 782
  ident: CR22
  article-title: Evolutionary origin and emergence of a highly successful clone of serotype M1 group A involved multiple horizontal gene transfer events
  publication-title: J. Infect. Dis.
  doi: 10.1086/432514
  contributor:
    fullname: Sumby
– ident: CR38
– ident: CR17
– volume: 144
  start-page: 1018
  year: 2016
  end-page: 1027
  ident: CR3
  article-title: High burden of invasive group A streptococcal disease in the Northern Territory of Australia
  publication-title: Epidemiol. Infect.
  doi: 10.1017/S0950268815002010
  contributor:
    fullname: Boyd
– volume: 5
  start-page: e11741
  year: 2010
  ident: CR11
  article-title: Population genetics of subspecies reveals widely dispersed clones and extensive recombination
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0011741
  contributor:
    fullname: McMillan
– volume: 35
  start-page: 518
  year: 2018
  end-page: 522
  ident: CR37
  article-title: UFBoot2: improving the ultrafast bootstrap approximation
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msx281
  contributor:
    fullname: Vinh
– volume: 21
  year: 2020
  ident: CR34
  article-title: Producing polished prokaryotic pangenomes with the Panaroo pipeline
  publication-title: Genome Biol.
  doi: 10.1186/s13059-020-02090-4
  contributor:
    fullname: Tonkin-Hill
– volume: 35
  start-page: 526
  year: 2019
  end-page: 528
  ident: CR42
  article-title: ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bty633
  contributor:
    fullname: Schliep
– volume: 50
  start-page: 3155
  year: 2022
  end-page: 3168
  ident: CR20
  article-title: Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac163
  contributor:
    fullname: Khedkar
– volume: 49
  start-page: 766
  year: 2009
  end-page: 772
  ident: CR1
  article-title: Human infections due to subspecies
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/605085
  contributor:
    fullname: Spellerberg
– volume: 205
  start-page: 201
  year: 2016
  end-page: 203
  ident: CR5
  article-title: The inequitable burden of group A streptococcal diseases in indigenous Australians
  publication-title: Med. J. Aust.
  doi: 10.5694/mja16.00400
  contributor:
    fullname: Carapetis
– volume: 70
  year: 2020
  ident: CR27
  article-title: Using SPAdes De Novo assembler
  publication-title: Curr. Protoc. Bioinform.
  doi: 10.1002/cpbi.102
  contributor:
    fullname: Korobeynikov
– volume: 22
  start-page: 247
  year: 2016
  end-page: 254
  ident: CR10
  article-title: Molecular characterization of invasive subsp. , Japan
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2202.141732
  contributor:
    fullname: Wajima
– volume: 6
  year: 2016
  ident: CR15
  article-title: Identification of a two-component Class IIb bacteriocin in by recombinase-based in vivo expression technology
  publication-title: Sci. Rep.
  doi: 10.1038/srep36233
  contributor:
    fullname: Armstrong
– volume: 51
  start-page: 1035
  year: 2019
  end-page: 1043
  ident: CR33
  article-title: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-019-0417-8
  contributor:
    fullname: Davies
– volume: 51
  start-page: W46
  year: 2023
  ident: 47816_CR32
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkad344
  contributor:
    fullname: K Blin
– volume: 29
  start-page: 304
  year: 2019
  ident: 47816_CR31
  publication-title: Genome Res.
  doi: 10.1101/gr.241455.118
  contributor:
    fullname: JA Lees
– ident: 47816_CR17
  doi: 10.1016/S2666-5247(23)00068-X
– ident: 47816_CR38
  doi: 10.1101/453142
– volume: 70
  year: 2020
  ident: 47816_CR27
  publication-title: Curr. Protoc. Bioinform.
  doi: 10.1002/cpbi.102
  contributor:
    fullname: A Prjibelski
– volume: 28
  start-page: 2190
  year: 2022
  ident: 47816_CR6
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2811.220029
  contributor:
    fullname: CM Wright
– volume: 20
  year: 2019
  ident: 47816_CR29
  publication-title: Genome Biol.
  doi: 10.1186/s13059-019-1891-0
  contributor:
    fullname: DE Wood
– volume: 37
  start-page: 1530
  year: 2020
  ident: 47816_CR36
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msaa015
  contributor:
    fullname: BQ Minh
– volume: 15
  year: 2024
  ident: 47816_CR13
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-024-46530-2
  contributor:
    fullname: O Xie
– volume: 21
  year: 2020
  ident: 47816_CR34
  publication-title: Genome Biol.
  doi: 10.1186/s13059-020-02090-4
  contributor:
    fullname: G Tonkin-Hill
– volume: 49
  start-page: 766
  year: 2009
  ident: 47816_CR1
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/605085
  contributor:
    fullname: CM Brandt
– volume: 218
  start-page: 324
  year: 2017
  ident: 47816_CR8
  publication-title: J. Infect. Dis.
  doi: 10.1093/infdis/jix637
  contributor:
    fullname: S Sikder
– volume: 13
  start-page: 1694
  year: 2007
  ident: 47816_CR18
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid1311.061258
  contributor:
    fullname: M McDonald
– volume: 29
  start-page: 260
  year: 2023
  ident: 47816_CR9
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2902.221218
  contributor:
    fullname: O Oppegaard
– volume: 7
  start-page: 1791
  year: 2022
  ident: 47816_CR26
  publication-title: Nat. Microbiol.
  doi: 10.1038/s41564-022-01238-1
  contributor:
    fullname: G Tonkin-Hill
– volume: 13
  year: 2022
  ident: 47816_CR39
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-022-28156-4
  contributor:
    fullname: C Higgs
– volume: 146
  start-page: 848
  year: 2018
  ident: 47816_CR24
  publication-title: Epidemiol. Infect.
  doi: 10.1017/S095026881800064X
  contributor:
    fullname: JJM Jose
– volume: 22
  start-page: 247
  year: 2016
  ident: 47816_CR10
  publication-title: Emerg. Infect. Dis.
  doi: 10.3201/eid2202.141732
  contributor:
    fullname: T Wajima
– volume: 205
  start-page: 201
  year: 2016
  ident: 47816_CR5
  publication-title: Med. J. Aust.
  doi: 10.5694/mja16.00400
  contributor:
    fullname: PJ May
– volume: 28
  start-page: 3150
  year: 2012
  ident: 47816_CR40
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts565
  contributor:
    fullname: L Fu
– volume: 28
  start-page: 477
  year: 2009
  ident: 47816_CR23
  publication-title: Pediatr. Infect. Dis. J.
  doi: 10.1097/INF.0b013e318194b2af
  contributor:
    fullname: AC Steer
– volume: 7
  start-page: 4910
  year: 2022
  ident: 47816_CR35
  publication-title: J. Open Source Softw.
  doi: 10.21105/joss.04910
  contributor:
    fullname: MG Jespersen
– volume: 35
  start-page: 1
  year: 1997
  ident: 47816_CR25
  publication-title: J. Clin. Microbiol.
  doi: 10.1128/jcm.35.1.1-4.1997
  contributor:
    fullname: JC Turner
– volume: 51
  start-page: 1035
  year: 2019
  ident: 47816_CR33
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-019-0417-8
  contributor:
    fullname: MR Davies
– volume: 30
  start-page: 2068
  year: 2014
  ident: 47816_CR28
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu153
  contributor:
    fullname: T Seemann
– volume: 35
  start-page: 518
  year: 2018
  ident: 47816_CR37
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msx281
  contributor:
    fullname: DT Hoang
– volume: 37
  start-page: 4572
  year: 2021
  ident: 47816_CR41
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btab705
  contributor:
    fullname: H Li
– volume: 5
  start-page: e11741
  year: 2010
  ident: 47816_CR11
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0011741
  contributor:
    fullname: DJ McMillan
– volume: 5
  start-page: 676
  year: 2014
  ident: 47816_CR12
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2014.00676
  contributor:
    fullname: CL McNeilly
– volume: 5
  start-page: e1000651
  year: 2009
  ident: 47816_CR14
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000651
  contributor:
    fullname: I Belotserkovsky
– volume: 3
  start-page: 124
  year: 2018
  ident: 47816_CR30
  publication-title: Wellcome Open Res.
  doi: 10.12688/wellcomeopenres.14826.1
  contributor:
    fullname: KA Jolley
– volume: 35
  start-page: 526
  year: 2019
  ident: 47816_CR42
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bty633
  contributor:
    fullname: E Paradis
– volume: 43
  start-page: 683
  year: 2006
  ident: 47816_CR19
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/506938
  contributor:
    fullname: MI McDonald
– volume: 18
  start-page: e0288016
  year: 2023
  ident: 47816_CR2
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0288016
  contributor:
    fullname: S Wiegele
– volume: 152
  start-page: 1991
  year: 2006
  ident: 47816_CR16
  publication-title: Microbiology
  doi: 10.1099/mic.0.28823-0
  contributor:
    fullname: NCK Heng
– volume: 215
  start-page: 36
  year: 2021
  ident: 47816_CR4
  publication-title: Med. J. Aust.
  doi: 10.5694/mja2.51117
  contributor:
    fullname: CM Wright
– volume: 6
  year: 2016
  ident: 47816_CR15
  publication-title: Sci. Rep.
  doi: 10.1038/srep36233
  contributor:
    fullname: BD Armstrong
– volume: 50
  start-page: 3155
  year: 2022
  ident: 47816_CR20
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac163
  contributor:
    fullname: S Khedkar
– volume: 356
  start-page: 1167
  year: 2000
  ident: 47816_CR7
  publication-title: Lancet
  doi: 10.1016/S0140-6736(00)02765-3
  contributor:
    fullname: A Haidan
– volume: 192
  start-page: 771
  year: 2005
  ident: 47816_CR22
  publication-title: J. Infect. Dis.
  doi: 10.1086/432514
  contributor:
    fullname: P Sumby
– volume: 144
  start-page: 1018
  year: 2016
  ident: 47816_CR3
  publication-title: Epidemiol. Infect.
  doi: 10.1017/S0950268815002010
  contributor:
    fullname: R Boyd
– volume: 5
  start-page: 687
  year: 2014
  ident: 47816_CR21
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2014.00687
  contributor:
    fullname: F Iannelli
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Snippet Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal...
Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal...
Abstract Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and...
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SubjectTerms 45
45/23
631/114/2785
692/308/174
692/699/255/1318
Adolescent
Adult
Antimicrobial agents
Antimicrobial resistance
Australia
Bacteria
Cardiovascular disease
Child
Child, Preschool
Drug resistance
Drug Resistance, Bacterial - genetics
Epidemiology
Family Characteristics
Female
Gene transfer
Gene Transfer, Horizontal
Genes
Genome, Bacterial - genetics
Genomes
Genomic analysis
Homology
Horizontal transfer
Households
Humanities and Social Sciences
Humans
Impetigo
Infections
Interspersed Repetitive Sequences - genetics
Longitudinal Studies
Male
multidisciplinary
Native peoples
Pathogens
Phenotypes
Science
Science (multidisciplinary)
Species
Streptococcal Infections - microbiology
Streptococcal Infections - transmission
Streptococcus - genetics
Streptococcus - isolation & purification
Streptococcus dysgalactiae
Streptococcus infections
Streptococcus pyogenes
Streptococcus pyogenes - classification
Streptococcus pyogenes - genetics
Streptococcus pyogenes - isolation & purification
Surveillance
Vaccines
Virulence
Young Adult
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Title Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange
URI https://link.springer.com/article/10.1038/s41467-024-47816-1
https://www.ncbi.nlm.nih.gov/pubmed/38658529
https://www.proquest.com/docview/3046660242
https://search.proquest.com/docview/3046512563
https://pubmed.ncbi.nlm.nih.gov/PMC11043366
https://doaj.org/article/42a9dffb6c3c4679a54672606334ce30
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