Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments

• Published in: Nature communications Vol. 15; no. 1; pp. 5988 - 16
• Main Authors: Vilarrasa-Blasi, Josep, Vellosillo, Tamara, Jinkerson, Robert E., Fauser, Friedrich, Xiang, Tingting, Minkoff, Benjamin B., Wang, Lianyong, Kniazev, Kiril, Guzman, Michael, Osaki, Jacqueline, Barrett-Wilt, Gregory A., Sussman, Michael R., Jonikas, Martin C., Dinneny, José R.
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 16.07.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 14/19; 45; 45/91; 49/39; 49/47; 631/208/2491; 631/449/2661/2665; 631/449/2669; 631/449/448; 82/58; 96/35; 96/63; Acclimation; Acclimatization; Actin; Algae; Aquatic plants; Arabidopsis; Arabidopsis - genetics; Arabidopsis - metabolism; Biosphere; Cell Compartmentation; Cellular stress response; Chlamydomonas; Chlamydomonas reinhardtii; Chlamydomonas reinhardtii - genetics; Chlamydomonas reinhardtii - metabolism; Chloroplasts; Chloroplasts - metabolism; Compartments; Cytoskeleton; Divergence; Evolutionary conservation; Evolutionary genetics; Functionals; Gene Expression Regulation, Plant; Genes; Genomics; Homeostasis; Humanities and Social Sciences; Kinases; Land conservation; MAP kinase; multidisciplinary; Multiomics; Osmoregulation; Osmotic Pressure; Osmotic stress; Plant Proteins - genetics; Plant Proteins - metabolism; Profilin; Protein transport; Proteomics; Science; Science (multidisciplinary); Signal Transduction; Stress, Physiological; Transcriptome; Transcriptomics; Yeast
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-024-49844-3

Maintenance of water homeostasis is a fundamental cellular process required by all living organisms. Here, we use the single-celled green alga Chlamydomonas reinhardtii to establish a foundational understanding of osmotic-stress signaling pathways through transcriptomics, phosphoproteomics, and functional genomics approaches. Comparison of pathways identified through these analyses with yeast and Arabidopsis allows us to infer their evolutionary conservation and divergence across these lineages. 76 genes, acting across diverse cellular compartments, were found to be important for osmotic-stress tolerance in Chlamydomonas through their functions in cytoskeletal organization, potassium transport, vesicle trafficking, mitogen-activated protein kinase and chloroplast signaling. We show that homologs for five of these genes have conserved functions in stress tolerance in Arabidopsis and reveal a novel PROFILIN-dependent stage of acclimation affecting the actin cytoskeleton that ensures tissue integrity upon osmotic stress. This study highlights the conservation of the stress response in algae and land plants, and establishes Chlamydomonas as a unicellular plant model system to dissect the osmotic stress signaling pathway. Evolution of osmoregulation allowed photosynthetic organisms to transform the whole biosphere. Leveraging high-throughput techniques in the freshwater alga Chlamydomonas reinhardtii , the authors uncover evolutionary conservation and divergence of osmoregulatory pathways within the green lineage.