Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes

• Published in: Environmental microbiology Vol. 22; no. 4; pp. 1327 - 1340
• Main Authors: Liang, Yuting, Xiao, Xian, Nuccio, Erin E., Yuan, Mengting, Zhang, Na, Xue, Kai, Cohan, Frederick M., Zhou, Jizhong, Sun, Bo
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01.04.2020; Wiley Subscription Services, Inc; Wiley
• Subjects: Abundance; Bacteria - classification; Bacteria - genetics; BASIC BIOLOGICAL SCIENCES; Biosphere; climate; Climate Change; Community composition; Corn; crop yield; Dynamic stability; Dynamics; ecological balance; Ecosystem disturbance; Ecosystem stability; Gene sequencing; genes; Global climate; Harvesting; Latitudinal variations; Microbial activity; microbial communities; Microbiota; Microorganisms; NifH gene; Nitrogen cycle; nitrogen cycling genes; NorB protein; Nucleic acids; rare taxa; Redundancy; ribosomal RNA; RNA; rRNA 16S; Soil; soil bacteria; Soil dynamics; soil ecology; Soil Microbiology; Soil microorganisms; Soils; Species diversity; stability; Taxa; temporal variation
• ISSN: 1462-2912; 1462-2920; 1462-2920
• DOI: 10.1111/1462-2920.14945

Summary Despite the important roles of soil microbes, especially the most diverse rare taxa in maintaining community diversity and multifunctionality, how different climate regimes alter the stability and functions of the rare microbial biosphere remains unknown. We reciprocally transplanted field soils across a latitudinal gradient to simulate climate change and sampled the soils annually after harvesting the maize over the following 6 years (from 2005 to 2011). By sequencing microbial 16S ribosomal RNA gene amplicons, we found that changing climate regimes significantly altered the composition and dynamics of soil microbial communities. A continuous succession of the rare and abundant communities was observed. Rare microbial communities were more stable under changing climatic regimes, with lower variations in temporal dynamics, and higher stability and constancy of diversity. More nitrogen cycling genes were detected in the rare members than in the abundant members, including amoA, napA, nifH, nirK, nirS, norB and nrfA. Random forest analysis and receiver operating characteristics analysis showed that rare taxa may act as potential contributors to maize yield under changing climatics. The study indicates that the taxonomically and functionally diverse rare biosphere has the potential to increase functional redundancy and enhance the ability of soil communities to counteract environmental disturbances. With ongoing global climate change, exploring the succession process and functional changes of rare taxa may be important in elucidating the ecosystem stability and multifunctionality that are mediated by microbial communities.