Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands

• Published in: The ISME Journal Vol. 14; no. 2; pp. 463 - 475
• Main Authors: Vieira, Selma, Sikorski, Johannes, Dietz, Sophie, Herz, Katharina, Schrumpf, Marion, Bruelheide, Helge, Scheel, Dierk, Friedrich, Michael W., Overmann, Jörg
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 01.02.2020; Nature Publishing Group
• Subjects: 101/58; 45/29; 45/77; 704/158/670; 704/158/855; Bacteria; Bacteria - classification; Bacteria - isolation & purification; Biomedical and Life Sciences; Composition; Ecology; Evolutionary Biology; Exudates; Exudation; Flowers & plants; Grassland; Grasslands; Herbivores; Land use; Life Sciences; Microbial Ecology; Microbial Genetics and Genomics; Microbiology; Moisture content; Phytometers; Plant Roots - microbiology; Plant species; Rhizosphere; Ribonucleic acid; RNA; Soil - chemistry; Soil Microbiology; Soil properties; Soil texture; Soil types; Soil water; Soils; Species; Texture; Water content
• ISSN: 1751-7362; 1751-7370
• DOI: 10.1038/s41396-019-0543-4

The active bacterial rhizobiomes and root exudate profiles of phytometers of six plant species growing in central European temperate grassland communities were investigated in three regions located up to 700 km apart, across diverse edaphic conditions and along a strong land use gradient. The recruitment process from bulk soil communities was identified as the major direct driver of the composition of active rhizosphere bacterial communities. Unexpectedly, the effect of soil properties, particularly soil texture, water content, and soil type, strongly dominated over plant properties and the composition of polar root exudates of the primary metabolism. While plant species-specific selection of bacteria was minor, the RNA-based composition of active rhizosphere bacteria substantially differed between rhizosphere and bulk soil. Although other variables could additionally be responsible for the consistent enrichment of particular bacteria in the rhizosphere, distinct bacterial OTUs were linked to the presence of specific polar root exudates independent of individual plant species. Our study also identified numerous previously unknown taxa that are correlated with rhizosphere dynamics and hence represent suitable targets for future manipulations of the plant rhizobiome.