Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response

• Published in: Proceedings of the National Academy of Sciences - PNAS Vol. 109; no. 48; pp. E3324 - E3333
• Main Authors: Venturelli, Ophelia S, El-Samad, Hana, Murray, Richard M
• Format: Journal Article
• Language: English
• Published: United States National Academy of Sciences 27.11.2012; National Acad Sciences
• Series: PNAS Plus
• Subjects: binding capacity; Biological Sciences; Feedback; galactose; Galactose - metabolism; Gene expression; Genotype & phenotype; Methane biosynthesis; phenotypic variation; PNAS Plus; Polymerase Chain Reaction; Saccharomyces cerevisiae; Saccharomyces cerevisiae - metabolism; Stochastic Processes; Yeast
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.1211902109

Feedback loops are ubiquitous features of biological networks and can produce significant phenotypic heterogeneity, including a bimodal distribution of gene expression across an isogenic cell population. In this work, a combination of experiments and computational modeling was used to explore the roles of multiple feedback loops in the bimodal, switch-like response of the Saccharomyces cerevisiae galactose regulatory network. Here, we show that bistability underlies the observed bimodality, as opposed to stochastic effects, and that two unique positive feedback loops established by Gal1p and Gal3p, which both regulate network activity by molecular sequestration of Gal80p, induce this bimodality. Indeed, systematically scanning through different single and multiple feedback loop knockouts, we demonstrate that there is always a concentration regime that preserves the system’s bimodality, except for the double deletion of GAL1 and the GAL3 feedback loop, which exhibits a graded response for all conditions tested. The constitutive production rates of Gal1p and Gal3p operate as bifurcation parameters because variations in these rates can also abolish the system’s bimodal response. Our model indicates that this second loss of bistability ensues from the inactivation of the remaining feedback loop by the overexpressed regulatory component. More broadly, we show that the sequestration binding affinity is a critical parameter that can tune the range of conditions for bistability in a circuit with positive feedback established by molecular sequestration. In this system, two positive feedback loops can significantly enhance the region of bistability and the dynamic response time.