A census of the lung: CellCards from LungMAP

The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to...

Full description

Saved in:
Bibliographic Details
Published inDevelopmental cell Vol. 57; no. 1; pp. 112 - 145.e2
Main Authors Sun, Xin, Perl, Anne-Karina, Li, Rongbo, Bell, Sheila M., Sajti, Eniko, Kalinichenko, Vladimir V., Kalin, Tanya V., Misra, Ravi S., Deshmukh, Hitesh, Clair, Geremy, Kyle, Jennifer, Crotty Alexander, Laura E., Masso-Silva, Jorge A., Kitzmiller, Joseph A., Wikenheiser-Brokamp, Kathryn A., Deutsch, Gail, Guo, Minzhe, Du, Yina, Morley, Michael P., Valdez, Michael J., Yu, Haoze V., Jin, Kang, Bardes, Eric E., Zepp, Jarod A., Neithamer, Terren, Basil, Maria C., Zacharias, William J., Verheyden, Jamie, Young, Randee, Bandyopadhyay, Gautam, Lin, Sara, Ansong, Charles, Adkins, Joshua, Salomonis, Nathan, Aronow, Bruce J., Xu, Yan, Pryhuber, Gloria, Whitsett, Jeff, Morrisey, Edward E.
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 10.01.2022
Subjects
cell cards
Cell Differentiation - genetics
CellCards
COVID
Databases as Topic
disease
Humans
lung
Lung - cytology
Lung - metabolism
Lung - physiology
LungMAP
regeneration
Regeneration - genetics
repair
resource
single cell
Single-Cell Analysis - methods
lung
COVID
repair
single cell
disease
LungMAP
resource
regeneration
cell cards
CellCards
Online AccessGet full text
ISSN1534-5807
1878-1551
1878-1551
DOI10.1016/j.devcel.2021.11.007

Cover

Abstract The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health. •CellCards provides a functional annotation of cell types within the lung•Combines functional and single cell data for a rigorous catalogue of cell lineages•CellCards will evolve to integrate and adapt to new data and emerging technologies In Sun et al., the CellCards initiative integrates functional and emerging single cell genomic datasets for an accurate and evolvable annotation of important cell lineages within the respiratory system. Integration of functional characteristics is critical to properly delineate cell lineages at homeostasis and provide a baseline dataset for comparison to disease states. These CellCards will incorporate new and emerging datasets and technologies as they arise for a better understanding of the impact of acute and chronic disease on lung cell biology.
AbstractList The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health.The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health.
The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health.
The human lung plays vital roles in respiration, host defense and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated from members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://lungmap.net/cell-cards-browser/ . We hope that this Lung CellCards will promote the community-wide effort to establish, maintain and restore respiratory health. Sun et al. takes a cellular census of the normal human lung by accounting for not only the recent explosion of single cell datasets, but also by annotating function and developmental origin. It is intended as a blueprint practical guide to initiate harmonization of cell nomenclature across lung biology studies.
The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health. •CellCards provides a functional annotation of cell types within the lung•Combines functional and single cell data for a rigorous catalogue of cell lineages•CellCards will evolve to integrate and adapt to new data and emerging technologies In Sun et al., the CellCards initiative integrates functional and emerging single cell genomic datasets for an accurate and evolvable annotation of important cell lineages within the respiratory system. Integration of functional characteristics is critical to properly delineate cell lineages at homeostasis and provide a baseline dataset for comparison to disease states. These CellCards will incorporate new and emerging datasets and technologies as they arise for a better understanding of the impact of acute and chronic disease on lung cell biology.
Author Kyle, Jennifer
Du, Yina
Bardes, Eric E.
Adkins, Joshua
Pryhuber, Gloria
Bell, Sheila M.
Kalin, Tanya V.
Basil, Maria C.
Whitsett, Jeff
Xu, Yan
Clair, Geremy
Zepp, Jarod A.
Lin, Sara
Guo, Minzhe
Morley, Michael P.
Aronow, Bruce J.
Jin, Kang
Bandyopadhyay, Gautam
Zacharias, William J.
Li, Rongbo
Salomonis, Nathan
Perl, Anne-Karina
Wikenheiser-Brokamp, Kathryn A.
Crotty Alexander, Laura E.
Sajti, Eniko
Ansong, Charles
Deutsch, Gail
Neithamer, Terren
Kalinichenko, Vladimir V.
Yu, Haoze V.
Masso-Silva, Jorge A.
Young, Randee
Valdez, Michael J.
Kitzmiller, Joseph A.
Sun, Xin
Misra, Ravi S.
Verheyden, Jamie
Deshmukh, Hitesh
Morrisey, Edward E.
AuthorAffiliation 12 Department of Laboratories, Seattle Children’s Hospital, OC.8.720, 4800 Sand Point Way Northeast, Seattle, WA 98105
18 National Heart, Lung and Blood Institute, Bethesda, Maryland
9 Division of Pathology and Laboratory Medicine, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229
15 Departments of Biomedical Informatics, Developmental Biology, and Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH
4 Department of Pediatrics, University of Cincinnati College of Medicine, 3230 Eden Avenue, Cincinnati, OH 45267
20 Department of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104
1 Department of Pediatrics
13 Penn-CHOP Lung Biology Institute
7 Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington
16 Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104
6 Department of Pediatrics Division of Neonatology, The University of Rochester Medical Cen
AuthorAffiliation_xml – name: 1 Department of Pediatrics
– name: 2 Department of Biological Sciences, University of California at San Diego, 9500 Gilman Dr., La Jolla, CA 92093
– name: 18 National Heart, Lung and Blood Institute, Bethesda, Maryland
– name: 17 Department of Internal Medicine, University of Cincinnati College of Medicine, 3230 Eden Avenue, Cincinnati, OH 45267
– name: 15 Departments of Biomedical Informatics, Developmental Biology, and Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH
– name: 3 Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229
– name: 20 Department of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104
– name: 16 Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104
– name: 5 Center for Lung Regenerative Medicine, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229
– name: 4 Department of Pediatrics, University of Cincinnati College of Medicine, 3230 Eden Avenue, Cincinnati, OH 45267
– name: 13 Penn-CHOP Lung Biology Institute
– name: 6 Department of Pediatrics Division of Neonatology, The University of Rochester Medical Center, Rochester, NY 14642
– name: 9 Division of Pathology and Laboratory Medicine, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229
– name: 8 Deparment of Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92093
– name: 11 Department of Pathology, University of Washington School of Medicine, Seattle, WA
– name: 14 Department of Medicine, University of Pennsylvania, Philadelphia, PA 19104
– name: 19 Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio
– name: 7 Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington
– name: 10 Department of Pathology & Laboratory Medicine, University of Cincinnati College of Medicine, 3230 Eden Avenue, Cincinnati, OH 45267
– name: 12 Department of Laboratories, Seattle Children’s Hospital, OC.8.720, 4800 Sand Point Way Northeast, Seattle, WA 98105
Author_xml – sequence: 1
  givenname: Xin
  surname: Sun
  fullname: Sun, Xin
  email: xinsun@health.ucsd.edu
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 2
  givenname: Anne-Karina
  surname: Perl
  fullname: Perl, Anne-Karina
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 3
  givenname: Rongbo
  surname: Li
  fullname: Li, Rongbo
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 4
  givenname: Sheila M.
  surname: Bell
  fullname: Bell, Sheila M.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 5
  givenname: Eniko
  surname: Sajti
  fullname: Sajti, Eniko
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 6
  givenname: Vladimir V.
  surname: Kalinichenko
  fullname: Kalinichenko, Vladimir V.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 7
  givenname: Tanya V.
  surname: Kalin
  fullname: Kalin, Tanya V.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 8
  givenname: Ravi S.
  surname: Misra
  fullname: Misra, Ravi S.
  organization: Department of Pediatrics Division of Neonatology, The University of Rochester Medical Center, Rochester, NY 14642, USA
– sequence: 9
  givenname: Hitesh
  surname: Deshmukh
  fullname: Deshmukh, Hitesh
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 10
  givenname: Geremy
  surname: Clair
  fullname: Clair, Geremy
  organization: Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA
– sequence: 11
  givenname: Jennifer
  surname: Kyle
  fullname: Kyle, Jennifer
  organization: Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA
– sequence: 12
  givenname: Laura E.
  surname: Crotty Alexander
  fullname: Crotty Alexander, Laura E.
  organization: Deparment of Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, University of California, San Diego, La Jolla, CA 92093, USA
– sequence: 13
  givenname: Jorge A.
  surname: Masso-Silva
  fullname: Masso-Silva, Jorge A.
  organization: Deparment of Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, University of California, San Diego, La Jolla, CA 92093, USA
– sequence: 14
  givenname: Joseph A.
  surname: Kitzmiller
  fullname: Kitzmiller, Joseph A.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 15
  givenname: Kathryn A.
  surname: Wikenheiser-Brokamp
  fullname: Wikenheiser-Brokamp, Kathryn A.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 16
  givenname: Gail
  surname: Deutsch
  fullname: Deutsch, Gail
  organization: Department of Pathology, University of Washington School of Medicine, Seattle, WA, USA
– sequence: 17
  givenname: Minzhe
  surname: Guo
  fullname: Guo, Minzhe
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 18
  givenname: Yina
  surname: Du
  fullname: Du, Yina
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 19
  givenname: Michael P.
  surname: Morley
  fullname: Morley, Michael P.
  organization: Penn-CHOP Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA
– sequence: 20
  givenname: Michael J.
  surname: Valdez
  fullname: Valdez, Michael J.
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 21
  givenname: Haoze V.
  surname: Yu
  fullname: Yu, Haoze V.
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 22
  givenname: Kang
  surname: Jin
  fullname: Jin, Kang
  organization: Departments of Biomedical Informatics, Developmental Biology, and Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
– sequence: 23
  givenname: Eric E.
  surname: Bardes
  fullname: Bardes, Eric E.
  organization: Departments of Biomedical Informatics, Developmental Biology, and Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
– sequence: 24
  givenname: Jarod A.
  surname: Zepp
  fullname: Zepp, Jarod A.
  organization: Penn-CHOP Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA
– sequence: 25
  givenname: Terren
  surname: Neithamer
  fullname: Neithamer, Terren
  organization: Penn-CHOP Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA
– sequence: 26
  givenname: Maria C.
  surname: Basil
  fullname: Basil, Maria C.
  organization: Penn-CHOP Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA
– sequence: 27
  givenname: William J.
  surname: Zacharias
  fullname: Zacharias, William J.
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 28
  givenname: Jamie
  surname: Verheyden
  fullname: Verheyden, Jamie
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 29
  givenname: Randee
  surname: Young
  fullname: Young, Randee
  organization: Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
– sequence: 30
  givenname: Gautam
  surname: Bandyopadhyay
  fullname: Bandyopadhyay, Gautam
  organization: Department of Pediatrics Division of Neonatology, The University of Rochester Medical Center, Rochester, NY 14642, USA
– sequence: 31
  givenname: Sara
  surname: Lin
  fullname: Lin, Sara
  organization: National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA
– sequence: 32
  givenname: Charles
  surname: Ansong
  fullname: Ansong, Charles
  organization: Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA
– sequence: 33
  givenname: Joshua
  surname: Adkins
  fullname: Adkins, Joshua
  organization: Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA
– sequence: 34
  givenname: Nathan
  surname: Salomonis
  fullname: Salomonis, Nathan
  organization: Department of Pediatrics, University of Cincinnati College of Medicine, 3230 Eden Avenue, Cincinnati, OH 45267, USA
– sequence: 35
  givenname: Bruce J.
  surname: Aronow
  fullname: Aronow, Bruce J.
  organization: Departments of Biomedical Informatics, Developmental Biology, and Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
– sequence: 36
  givenname: Yan
  surname: Xu
  fullname: Xu, Yan
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 37
  givenname: Gloria
  surname: Pryhuber
  fullname: Pryhuber, Gloria
  organization: Department of Pediatrics Division of Neonatology, The University of Rochester Medical Center, Rochester, NY 14642, USA
– sequence: 38
  givenname: Jeff
  surname: Whitsett
  fullname: Whitsett, Jeff
  organization: Division of Neonatology and Pulmonary Biology, Cincinnati Children’s Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
– sequence: 39
  givenname: Edward E.
  surname: Morrisey
  fullname: Morrisey, Edward E.
  email: emorrise@pennmedicine.upenn.edu
  organization: Penn-CHOP Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA
BackLink https://www.ncbi.nlm.nih.gov/pubmed/34936882$$D View this record in MEDLINE/PubMed
BookMark eNqFkUtv1DAUhS1URB_wDxDKkgUJvk4c210gjUa0IA2CBawtP25ajzJxsZOR-Pd4NFMELGBly77nO1fnXJKzKU5IyEugDVDo324bj3uHY8MogwagoVQ8IRcghayBczgrd952NZdUnJPLnLe0yEDSZ-S87VTbS8kuyJtV5XDKS67iUM33WI3LdHddrXEc1yb5XA0p7qpNefy0-vKcPB3MmPHF6bwi327ef11_qDefbz-uV5vacabm2gHaAldCWmvAUqFAOsuZUL3ofD8I6lULQg3GdCCQdq6nzFrfceVsK317Rd4duQ-L3aEvC87JjPohhZ1JP3Q0Qf_5M4V7fRf3WpUsuOgK4PUJkOL3BfOsdyGXrEYzYVyyZj20THHODqOvfvf6ZfIYURm4Pg64FHNOOGgXZjOHeLAOowaqD33orT72oQ99aABd-iji7i_xI_8_slMAWFLeB0w6u4CTQx8Suln7GP4N-AkTraTU
CitedBy_id crossref_primary_10_1126_science_ado5561
crossref_primary_10_1210_endocr_bqad061
crossref_primary_10_1016_j_pccm_2023_10_007
crossref_primary_10_1038_s41467_023_44184_0
crossref_primary_10_1038_s41587_025_02569_0
crossref_primary_10_1016_j_stem_2024_12_002
crossref_primary_10_1016_j_cca_2024_119765
crossref_primary_10_1242_dev_202430
crossref_primary_10_1186_s13619_024_00212_y
crossref_primary_10_1164_rccm_202210_2015OC
crossref_primary_10_1165_rcmb_2023_0031ED
crossref_primary_10_3762_bjnano_16_10
crossref_primary_10_1165_rcmb_2023_0090ED
crossref_primary_10_1038_s41467_025_57163_4
crossref_primary_10_1016_j_bcp_2023_115978
crossref_primary_10_1172_jci_insight_153033
crossref_primary_10_7554_eLife_83835
crossref_primary_10_1016_j_devcel_2022_08_010
crossref_primary_10_1146_annurev_physiol_032922_082826
crossref_primary_10_1152_ajplung_00269_2022
crossref_primary_10_3390_cells11162595
crossref_primary_10_1002_path_5971
crossref_primary_10_1016_j_isci_2024_109938
crossref_primary_10_1038_s41467_024_49477_6
crossref_primary_10_1002_ppul_27062
crossref_primary_10_1002_ppul_26490
crossref_primary_10_1016_j_jtcvs_2023_03_009
crossref_primary_10_1164_rccm_202306_0964OC
crossref_primary_10_1016_j_bbrc_2022_03_040
crossref_primary_10_1038_s41467_023_38177_2
crossref_primary_10_1002_mco2_494
crossref_primary_10_1038_s41586_024_07608_5
crossref_primary_10_1038_s41586_023_06423_8
crossref_primary_10_1016_j_isci_2023_106097
crossref_primary_10_1038_s41467_023_40173_5
crossref_primary_10_1038_s41588_022_01243_4
crossref_primary_10_1038_s41598_024_84820_3
crossref_primary_10_1016_j_stem_2024_03_017
crossref_primary_10_1242_dev_200909
crossref_primary_10_7554_eLife_77522
crossref_primary_10_1165_rcmb_2023_0439ED
crossref_primary_10_1165_rcmb_2022_0165OC
crossref_primary_10_1165_rcmb_2023_0356MA
crossref_primary_10_1152_ajplung_00304_2023
crossref_primary_10_1038_s41467_024_52154_3
crossref_primary_10_1164_rccm_202311_2047PP
crossref_primary_10_3389_fcell_2023_1290876
crossref_primary_10_1016_j_celbio_2025_100013
crossref_primary_10_1242_dev_202659
crossref_primary_10_1016_j_stem_2024_08_001
crossref_primary_10_1089_hum_2024_063
crossref_primary_10_1172_JCI170498
crossref_primary_10_1172_JCI172116
crossref_primary_10_1016_j_cmet_2024_07_008
crossref_primary_10_1038_s41390_022_02428_7
crossref_primary_10_1111_acel_14425
crossref_primary_10_1152_ajplung_00130_2023
crossref_primary_10_1038_s41598_024_82736_6
crossref_primary_10_1146_annurev_pathmechdis_031621_024344
crossref_primary_10_1016_j_cotox_2023_100445
crossref_primary_10_1016_j_jare_2024_05_020
crossref_primary_10_1002_pul2_70019
crossref_primary_10_1038_s41564_024_01908_2
crossref_primary_10_1165_rcmb_2022_0038TR
crossref_primary_10_1016_j_stem_2024_02_009
crossref_primary_10_1186_s13578_022_00894_4
crossref_primary_10_3390_microorganisms11082116
crossref_primary_10_3389_fimmu_2023_1268078
crossref_primary_10_3389_fmolb_2022_1022775
crossref_primary_10_1172_JCI178562
crossref_primary_10_1016_j_stem_2023_10_001
crossref_primary_10_1016_j_cca_2024_119835
Cites_doi 10.1136/thx.2008.111435
10.1038/s41467-019-08315-w
10.1172/JCI94639
10.1164/rccm.201306-1181OC
10.1242/dev.170571
10.1016/j.stem.2021.04.026
10.1016/j.stemcr.2019.04.003
10.1038/s41590-018-0136-9
10.1172/JCI139519
10.1038/s41586-018-0393-7
10.1016/j.cell.2015.09.021
10.1164/rccm.201804-0734OC
10.1126/science.1184733
10.1126/science.aad7969
10.1007/s00281-016-0582-0
10.1186/1741-7007-11-111
10.1172/JCI73434
10.1084/jem.20131199
10.1016/j.stem.2009.04.002
10.1126/sciimmunol.aat9453
10.1016/j.stem.2019.12.014
10.1016/j.yexcr.2015.12.004
10.1084/jem.20062648
10.1016/j.intimp.2021.107485
10.3389/fimmu.2019.02458
10.1161/ATVBAHA.114.303218
10.1165/rcmb.2009-0226OC
10.1164/rccm.200308-1107OC
10.7554/eLife.36865
10.1016/j.celrep.2015.11.058
10.3389/fimmu.2018.01777
10.1038/ng1192-240
10.1073/pnas.0808649105
10.1002/(SICI)1097-0177(199808)212:4<482::AID-AJA2>3.0.CO;2-D
10.1242/dev.143784
10.1038/ni.3056
10.1073/pnas.1813952116
10.1177/41.10.8245407
10.1016/j.stem.2018.03.017
10.1182/blood-2012-05-428607
10.1242/dev.125.24.4977
10.1016/j.stem.2018.03.018
10.1016/j.immuni.2019.02.002
10.1007/s11427-019-9568-x
10.1165/rcmb.2016-0304OC
10.1016/j.coi.2020.02.004
10.1016/j.ydbio.2011.06.011
10.1126/sciadv.aba1972
10.1016/j.immuni.2019.04.019
10.3389/fimmu.2020.02103
10.1165/rcmb.2013-0086MA
10.1152/ajplung.90209.2008
10.1016/j.immuni.2017.02.016
10.1093/nar/25.6.1317
10.1016/S0002-9440(10)63147-1
10.1165/rcmb.2016-0290TR
10.1038/nature14189
10.1242/dev.124.23.4867
10.1152/ajplung.00170.2003
10.1126/science.aac9593
10.1038/s41586-018-0394-6
10.1089/vim.2019.0141
10.1182/blood-2006-06-027490
10.1038/nature07060
10.1242/dev.134866
10.1016/j.stem.2014.07.012
10.1152/ajplung.00254.2018
10.1073/pnas.1204710109
10.1242/dev.037317
10.1146/annurev-immunol-020711-075053
10.1038/s41588-019-0388-9
10.1073/pnas.1313223110
10.1016/j.cell.2017.07.034
10.1242/dev.122.6.1693
10.1016/j.jaci.2013.02.023
10.1136/thx.27.2.181
10.1016/j.immuni.2013.04.011
10.1016/j.it.2020.01.003
10.1165/ajrcmb.20.6.3475
10.7554/eLife.53072
10.1002/dvg.20520
10.1172/JCI99287
10.1016/j.stem.2018.04.015
10.1016/j.cell.2013.03.010
10.1007/s12016-020-08779-5
10.1016/j.jaci.2017.08.032
10.3389/fimmu.2019.01222
10.1152/physrev.00001.2018
10.1093/icb/icz002
10.1126/science.aaz9330
10.1007/s11626-009-9262-x
10.1016/j.immuni.2015.03.011
10.1006/dbio.1999.9234
10.1016/j.devcel.2012.07.009
10.1111/j.1440-1843.2012.02204.x
10.1165/rcmb.2012-0030OC
10.3389/fimmu.2019.03130
10.1038/s41598-018-31640-x
10.1242/dev.02315
10.1165/ajrcmb.24.6.4217
10.1371/journal.pone.0018472
10.1111/cea.13374
10.1038/s41467-018-04913-2
10.1165/rcmb.2012-0485OC
10.1016/j.devcel.2018.03.001
10.1161/CIRCULATIONAHA.119.041433
10.1038/nri3365
10.1007/s00011-020-01408-z
10.1038/s41556-020-00591-9
10.1152/ajplung.00032.2019
10.1126/science.aaa6566
10.1002/stem.680
10.1128/mSystems.00043-16
10.1002/dvdy.20461
10.1126/sciadv.aba1983
10.1038/ncb3580
10.1038/nature10573
10.1242/dev.126.18.4005
10.1038/ni1022
10.1126/science.aan8546
10.1038/nature12358
10.1016/j.cell.2020.01.015
10.1002/stem.2443
10.1152/ajplung.00041.2018
10.1016/S0046-8177(98)90392-6
10.1016/j.immuni.2020.02.005
10.1152/ajplung.00342.2013
10.1038/s41586-020-2922-4
10.1152/physrev.00039.2014
10.1038/ni.3443
10.1165/rcmb.2015-0146OC
10.1016/j.devcel.2011.04.019
10.1165/rcmb.2018-0125OC
10.1016/j.it.2020.04.011
10.15252/embj.2019102099
10.1152/ajplung.00128.2019
10.1165/rcmb.2014-0461OC
10.1016/j.devcel.2021.05.016
10.1084/jem.162.3.1025
10.1242/dmm.006031
10.4049/jimmunol.1801208
10.1161/CIRCRESAHA.118.313788
10.1016/j.ydbio.2015.11.017
10.1038/nature12930
10.7150/ijbs.9997
10.1136/thx.24.6.729
10.1038/nature03511
10.1126/science.aam5809
10.1164/rccm.201212-2297OC
10.1038/nature16161
10.1016/j.immuni.2011.10.018
10.1038/ni.2131
10.1172/JCI58050
10.1126/science.abc3172
10.1152/ajplung.00112.2003
10.1186/s12964-019-0449-9
10.1038/s41590-020-0753-y
10.1016/j.isci.2020.101724
10.1007/978-3-030-11093-2_3
10.1164/rccm.201812-2312OC
10.1164/rccm.202003-0758OC
10.1016/j.cell.2018.09.009
10.1016/j.stem.2017.03.024
10.1172/JCI68782
10.1152/ajplung.00272.2014
10.1038/ni.3059
10.1038/nature25786
10.1016/j.jaci.2011.09.041
10.1016/j.cell.2019.09.010
10.1016/j.stem.2016.05.012
10.1038/s41590-019-0582-z
10.1016/j.immuni.2010.10.017
10.3390/ijms18122674
10.1073/pnas.1719474115
10.7554/eLife.62522
10.1152/ajplung.00372.2010
10.1016/j.ajpath.2020.04.017
10.1016/j.ccell.2017.11.004
10.1016/j.stem.2017.03.011
10.1126/scisignal.aad1899
10.1126/scitranslmed.aaa9712
10.1126/science.aau0964
10.1038/s41586-020-2822-7
10.1165/rcmb.2016-0361OC
10.1016/j.immuni.2020.01.005
10.1016/j.devcel.2017.09.003
10.1038/nature13903
10.1007/s10456-017-9570-9
10.1016/j.ydbio.2017.03.020
10.1038/ncomms7727
10.1016/j.stemcr.2016.09.010
10.1164/rccm.201712-2410OC
10.1165/ajrcmb.24.6.4498
10.3390/vaccines9020174
10.1038/mi.2008.39
10.1038/s41422-020-00445-x
10.1006/dbio.1994.1340
10.1016/j.ajpath.2011.04.039
10.1016/j.cell.2008.09.016
10.1038/nature14553
10.1073/pnas.96.21.11895
10.3389/fphys.2018.00113
10.1038/s41572-019-0066-3
10.1016/j.stemcr.2018.03.013
10.1038/s41590-019-0420-3
10.1111/j.1365-2249.2008.03791.x
10.1126/sciadv.aaw3851
10.1126/science.aba0629
10.1161/CIRCRESAHA.114.303119
10.1016/j.imlet.2013.11.011
10.1111/imm.13143
10.1164/rccm.201911-2199OC
10.1016/j.cell.2005.03.032
10.1242/dev.121.7.2031
10.1038/s41586-019-0969-x
10.1016/j.devcel.2020.01.009
10.1093/bioinformatics/btz250
10.1152/ajplung.00475.2018
10.22203/eCM.v028a16
10.1164/rccm.201911-2105OC
10.1016/j.immuni.2019.01.012
10.1016/j.ccm.2016.04.004
10.1172/jci.insight.126556
10.1016/j.immuni.2013.08.007
10.1126/sciimmunol.aax0416
10.1073/pnas.0906850106
10.1172/JCI57673
10.1101/gad.10.1.60
10.1172/jci.insight.121252
10.1182/blood-2004-08-3057
10.4049/jimmunol.1500963
10.1002/sctm.20-0526
10.1002/dvg.20448
10.1002/stem.2615
10.3389/fimmu.2018.02193
10.1186/s12967-020-02632-1
10.1242/dev.065110
10.1038/s41467-020-16239-z
10.1002/dvdy.85
10.1152/ajplung.00289.2018
10.1016/j.cell.2017.07.028
10.1164/rccm.201707-1368OC
10.1242/dev.124.1.53
10.1101/gad.338228.120
10.1016/j.joca.2007.08.001
10.1177/002215549904700202
10.1038/s41591-021-01332-7
10.1038/nature13989
10.1242/dev.181032
10.1038/s41577-019-0141-8
10.1038/s41586-019-1652-y
10.1053/j.gastro.2009.06.072
10.1002/stem.1911
10.1016/bs.ircmb.2019.07.004
10.1242/dev.093351
10.1034/j.1398-9995.2000.00118.x
10.1242/dev.163014
10.1111/imr.12639
10.1101/gad.216226.113
10.1016/j.stem.2020.03.009
10.1513/pats.200803-025HR
10.1152/ajplung.00342.2009
10.1038/ni.3078
10.1016/j.devcel.2009.01.014
10.5966/sctm.2012-0056
10.1007/s12016-019-08748-7
10.1111/j.1365-2249.2009.03965.x
10.1016/j.immuni.2016.02.024
10.1186/1471-2105-12-6
10.1073/pnas.1703228114
10.1016/j.jaci.2016.11.020
10.1172/JCI125044
10.1073/pnas.0900668106
10.1073/pnas.1117988108
10.1016/j.stem.2020.09.017
10.1016/j.ydbio.2008.04.018
10.1084/jem.20162152
10.1615/CritRevImmunol.2018026459
10.1073/pnas.1207238109
10.1016/j.matbio.2020.05.002
10.1126/science.aam6603
10.1161/CIRCULATIONAHA.120.045750
10.1007/978-3-319-68483-3_1
10.1016/j.coi.2019.05.011
10.1038/ni.3444
10.1038/nature13047
10.1513/AnnalsATS.201606-465MG
10.1038/nature11813
10.1152/ajplung.00068.2019
ContentType Journal Article
Copyright 2022 The Authors
Copyright © 2021 Elsevier Inc. All rights reserved.
Copyright_xml – notice: 2022 The Authors
– notice: Copyright © 2021 Elsevier Inc. All rights reserved.
CorporateAuthor NHLBI LungMAP Consortium
CorporateAuthor_xml – name: NHLBI LungMAP Consortium
DBID 6I.
AAFTH
AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7X8
5PM
DOI 10.1016/j.devcel.2021.11.007
DatabaseName ScienceDirect Open Access Titles
Elsevier:ScienceDirect:Open Access
CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList MEDLINE - Academic
MEDLINE
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 1878-1551
EndPage 145.e2
ExternalDocumentID PMC9202574
34936882
10_1016_j_devcel_2021_11_007
S1534580721008923
Genre Dataset
Journal Article
Research Support, N.I.H., Extramural
GrantInformation_xml – fundername: NHLBI NIH HHS
  grantid: U01 HL122700
– fundername: NHLBI NIH HHS
  grantid: U01 HL148861
– fundername: NHLBI NIH HHS
  grantid: R01 HL149631
– fundername: NHLBI NIH HHS
  grantid: U01 HL148867
– fundername: NHLBI NIH HHS
  grantid: U01 HL134745
– fundername: NHLBI NIH HHS
  grantid: U01 HL148860
– fundername: NHLBI NIH HHS
  grantid: U54 HL145608
– fundername: NHLBI NIH HHS
  grantid: U01 HL148856
– fundername: NHLBI NIH HHS
  grantid: U24 HL148865
– fundername: NHLBI NIH HHS
  grantid: R01 HL141174
GroupedDBID ---
--K
0R~
1~5
2WC
4.4
457
4G.
5GY
62-
6I.
7-5
AACTN
AAEDW
AAFTH
AAIAV
AAKRW
AALRI
AAUCE
AAVLU
AAXUO
ABJNI
ABMAC
ABMWF
ABVKL
ACGFO
ACGFS
ACNCT
ADBBV
ADEZE
ADJPV
AEFWE
AENEX
AEXQZ
AFFNX
AFTJW
AGKMS
AITUG
ALKID
ALMA_UNASSIGNED_HOLDINGS
AMRAJ
ASPBG
AVWKF
AZFZN
BAWUL
CS3
D0L
DIK
DU5
E3Z
EBS
EJD
F5P
FCP
FDB
FEDTE
FIRID
HVGLF
IHE
IXB
J1W
JIG
M3Z
M41
O-L
O9-
OK1
P2P
RCE
ROL
RPZ
SDG
SES
SSZ
TR2
WQ6
ZA5
29F
53G
5VS
AAEDT
AAIKJ
AAMRU
AAQFI
AAQXK
AAYWO
AAYXX
ABDGV
ABWVN
ACRPL
ACVFH
ADCNI
ADMUD
ADNMO
ADVLN
AETEA
AEUPX
AFPUW
AGCQF
AGHFR
AGQPQ
AIGII
AKAPO
AKBMS
AKRWK
AKYEP
APXCP
CITATION
FGOYB
HZ~
OZT
R2-
RIG
UHS
CGR
CUY
CVF
ECM
EFKBS
EIF
NPM
7X8
5PM
ID FETCH-LOGICAL-c529t-c1eb882978bba1b07918cb5279674d6f70d93179faa417e04c602bbd459cb38d3
IEDL.DBID IXB
ISSN 1534-5807
1878-1551
IngestDate Thu Aug 21 14:02:53 EDT 2025
Fri Jul 11 11:33:27 EDT 2025
Mon Jul 21 05:54:27 EDT 2025
Thu Apr 24 22:53:54 EDT 2025
Tue Jul 01 00:48:13 EDT 2025
Fri Feb 23 02:43:17 EST 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 1
Keywords lung
COVID
repair
single cell
disease
LungMAP
resource
regeneration
cell cards
CellCards
Language English
License This is an open access article under the CC BY license.
Copyright © 2021 Elsevier Inc. All rights reserved.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c529t-c1eb882978bba1b07918cb5279674d6f70d93179faa417e04c602bbd459cb38d3
Notes ObjectType-Article-2
SourceType-Scholarly Journals-1
ObjectType-Undefined-1
ObjectType-Feature-3
content type line 23
Conceptualization: X.S., E.E.M, J.W., Y,X., G.P., J.A., G.C., C.A., B.A.,N.S.
Writing: X.S., A.K.P., R.L., S.M.B., E.S., V.V.K., T.V.K., R.S.M. H.D., G.C, L.E.C.A., J.M.S., J.A.Z., T.N., Y.X., E.E.M.
Resources: G.P., R.S.M.
Project administration: S.L.
Funding acquisition: X.S., E.E.M, J.W., Y,X., G.P., J.A., G.C., C.A., B.A., N.S.
Visualization: S.M.B., E.S., V.V.K, T.V.K., R.S.M., J.A..K., K.A.W.B., G.D., K.J.
AUTHOR CONTRIBUTIONS
Investigation: R.L., J.K., J.M.S., J.A.K., M.J.V., H.V.Y., K.J., J.A.Z., T.N., M.C.B., W.J.Z., J.V., R.Y.
Data Curation: M.G., Y.D., M.P.M., M.J.V., H.V.Y., K.J., E.E.B., G.B.
OpenAccessLink https://www.sciencedirect.com/science/article/pii/S1534580721008923
PMID 34936882
PQID 2613295524
PQPubID 23479
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_9202574
proquest_miscellaneous_2613295524
pubmed_primary_34936882
crossref_citationtrail_10_1016_j_devcel_2021_11_007
crossref_primary_10_1016_j_devcel_2021_11_007
elsevier_sciencedirect_doi_10_1016_j_devcel_2021_11_007
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2022-01-10
PublicationDateYYYYMMDD 2022-01-10
PublicationDate_xml – month: 01
  year: 2022
  text: 2022-01-10
  day: 10
PublicationDecade 2020
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Developmental cell
PublicationTitleAlternate Dev Cell
PublicationYear 2022
Publisher Elsevier Inc
Publisher_xml – name: Elsevier Inc
References Frank, Penkala, Zepp, Sivakumar, Linares-Saldana, Zacharias, Stolz, Pankin, Lu, Wang (bib79) 2019; 116
Sheikh, Misra, Rosas, Adams, Greif (bib232) 2015; 7
Grasseau, Boudigou, Le Pottier, Chriti, Cornec, Pers, Renaudineau, Hillion (bib92) 2020; 58
Pardo-Saganta, Tata, Law, Saez, Chow, Prabhu, Gridley, Rajagopal (bib191) 2015; 523
Bazigou, Lyons, Smith, Venn, Cope, Brown, Makinen (bib16) 2011; 121
Hong, Reynolds, Watkins, Fuchs, Stripp (bib113) 2004; 164
Hines, Jones, Verheyden, Harvey, Sun (bib107) 2013; 110
Finkbeiner, Zlock, Mehdi, Widdicombe (bib76) 2010; 46
Rosales (bib220) 2018; 9
Peng, Tian, Boogerd, Lu, Kadzik, Stewart, Evans, Morrisey (bib196) 2013; 500
Rodrigues, Alberti-Servera, Eremin, Grajales-Reyes, Ivanek, Tussiwand (bib219) 2018; 19
Wen, Zhang, Nian, Wei, Guo, Yu, Xie, Ye, Yuan (bib274) 2021; 94
Naski, Colvin, Coffin, Ornitz (bib176) 1998; 125
Ehling, Adams, Benedito, Adams (bib70) 2013; 140
Hung, Linn, Chow, Kobayashi, Mittelsteadt, Altemeier, Gharib, Schnapp, Duffield (bib117) 2013; 188
Gillich, Zhang, Farmer, Travaglini, Tan, Gu, Zhou, Feinstein, Krasnow, Metzger (bib87) 2020; 586
Salwig, Spitznagel, Vazquez-Armendariz, Khalooghi, Guenther, Herold, Szibor, Braun (bib223) 2019; 38
Corada, Morini, Dejana (bib52) 2014; 34
Yuan, Volckaert, Redente, Hopkins, Klinkhammer, Wasnick, Chao, Yuan, Zhang, Yao (bib291) 2019; 12
Allie, Randall (bib3) 2020; 33
Wang, Tang, Huang, Li, Wang, Yu, Zhang, Li, Dai, Wang (bib267) 2018; 115
Bandyopadhyay, Huyck, Misra, Bhattacharya, Wang, Mereness, Lillis, Myers, Ashton, Bushnell (bib11) 2018; 315
Guilliams, De Kleer, Henri, Post, Vanhoutte, De Prijck, Deswarte, Malissen, Hammad, Lambrecht (bib96) 2013; 210
Bellusci, Grindley, Emoto, Itoh, Hogan (bib19) 1997; 124
Zhu, Chen, Lichtler, O’Keefe, Chen (bib300) 2008; 16
Rawlins, Okubo, Xue, Brass, Auten, Hasegawa, Wang, Hogan (bib208) 2009; 4
Schneider, Lee, Koga, Ricardo-Gonzalez, Nussbaum, Smith, Villeda, Liang, Locksley (bib227) 2019; 50
Kim, Jackson, Woolfenden, Lawrence, Babar, Vogel, Crowley, Bronson, Jacks (bib135) 2005; 121
Schoch, Lori, Burns, Eldred, Olsen, Randell (bib228) 2004; 286
Kim, Ables, Dickel, Eisch, Johnson (bib136) 2011; 6
Sajti, Link, Ouyang, Spann, Westin, Romanoski, Fonseca, Prince, Glass (bib222) 2020; 21
Lee, Foskett (bib145) 2010; 298
Imanishi, Saito (bib119) 2020; 41
Canli, Nicolas, Gupta, Finkelmeier, Goncharova, Pesic, Neumann, Horst, Lower, Sahin (bib30) 2017; 32
Paul, Muehling, Eccles, Woodfolk (bib195) 2019; 49
von Gise, Stevens, Honor, Oh, Gao, Zhou, Pu (bib264) 2016; 54
You, Huang, Richer, Schmidt, Zabner, Borok, Brody (bib288) 2004; 286
Borthwick, Shahbazian, Krantz, Dorin, Randell (bib24) 2001; 24
Adams, Schupp, Poli, Ayaub, Neumark, Ahangari, Chu, Raby, DeIuliis, Januszyk (bib1) 2020; 6
Lynch, Anderson, Rotti, Tyler, Crooke, Choi, Montoro, Silverman, Shahin, Zhao (bib154) 2018; 22
Misharin, Morales-Nebreda, Mutlu, Budinger, Perlman (bib165) 2013; 49
Ng, Ostuni, Hidalgo (bib178) 2019; 19
Que, Wilm, Hasegawa, Wang, Bader, Hogan (bib201) 2008; 105
Torday, Rehan (bib252) 2016; 340
Monticelli, Sonnenberg, Abt, Alenghat, Ziegler, Doering, Angelosanto, Laidlaw, Yang, Sathaliyawala (bib168) 2011; 12
Goss, Tian, Cheng, Yang, Zhou, Cohen, Morrisey (bib91) 2011; 356
Huang, Mao, Chen, Sun, Kawabe, Li, Usher, Zhu, Urban, Paul, Germain (bib115) 2018; 359
Trapnell, Nakata, Bonella, Campo, Griese, Hamilton, Wang, Morgan, Cottin, McCarthy (bib254) 2019; 5
Mould, Jackson, Henson, Seibold, Janssen (bib171) 2019; 4
Rane, Jackson, Pastore, Zhao, Weiner, Patel, Herbert, Cohen, Vaughan (bib202) 2019; 316
Hogan, Barkauskas, Chapman, Epstein, Jain, Hsia, Niklason, Calle, Le, Randell (bib110) 2014; 15
Ntokou, Klein, Dontireddy, Becker, Bellusci, Richardson, Szibor, Braun, Morty, Seeger (bib181) 2015; 309
Lynch, Anderson, Xie, Crooke, Liu, Tyler, Luo, Kusner, Zhang, Neff (bib153) 2016; 34
Nakano, Sonoda, Hayashi, Yamatodani, Kanayama, Yamamura, Asai, Yonezawa, Kitamura, Galli (bib174) 1985; 162
Ravindran, Rönnberg, Dahlin, Mazzurana, Säfholm, Orre, Al-Ameri, Peachell, Adner, Dahlén (bib204) 2018; 9
Hao, Hao, Andersen-Nissen, Mauck, Zheng, Butler, Lee, Wilk, Darby, Zagar (bib102) 2020
Kalucka, de Rooij, Goveia, Rohlenova, Dumas, Meta, Conchinha, Taverna, Teuwen, Veys (bib128) 2020; 180
Kiyokawa, Yamaoka, Matsuoka, Tokuhara, Abe, Morimoto (bib138) 2021; 56
Rock, Onaitis, Rawlins, Lu, Clark, Xue, Randell, Hogan (bib216) 2009; 106
Bankova, Dwyer, Yoshimoto, Ualiyeva, McGinty, Raff, von Moltke, Kanaoka, Frank Austen, Barrett (bib12) 2018; 3
Wang, Wen, Ren, Li, Zhang, Guo, Xu, Whitsett, Kalin, Kalinichenko (bib270) 2021; 204
Hoeffel, Chen, Lavin, Low, Almeida, See, Beaudin, Lum, Low, Forsberg (bib109) 2015; 42
Arman, Haffner-Krausz, Gorivodsky, Lonai (bib6) 1999; 96
Carlin, Stamatiades, Auffray, Hanna, Glover, Vizcay-Barrena, Hedrick, Cook, Diebold, Geissmann (bib32) 2013; 153
Kato, Diéguez-Hurtado, Park, Hong, Kato-Azuma, Adams, Stehling, Trappmann, Wrana, Koh, Adams (bib131) 2018; 9
Guha, Vasconcelos, Cai, Yoneda, Hinds, Qian, Li, Dickel, Johnson, Kimura (bib95) 2012; 109
Meyrick, Reid (bib162) 1970; 107
Volckaert, Yuan, Chao, Bell, Sitaula, Szimmtenings, El Agha, Chanda, Majka, Bellusci (bib263) 2017; 43
Zuo, Zhang, Wu, Guan, Liew, Yamamoto, Wang, Lim, Vincent, Lessard (bib301) 2015; 517
Meyrick, Sturgess, Reid (bib163) 1969; 24
Whitsett, Kalin, Xu, Kalinichenko (bib277) 2019; 99
Chairakaki, Saridaki, Pyrillou, Mouratis, Koltsida, Walton, Bartlett, Stavropoulos, Boon, Rovina (bib36) 2018; 142
Siracusa (bib235) 2016
Yang, García-Verdugo, Soriano-Navarro, Srinivasan, Scallan, Singh, Epstein, Oliver (bib284) 2012; 120
Vivanco Gonzalez, Oliveria, Tebaykin, Ivison, Mukai, Tsai, Borges, Nadeau, Galli, Tsai (bib262) 2020; 23
Inclan-Rico, Ponessa, Valero-Pacheco, Hernandez, Sy, Lemenze, Beaulieu, Siracusa (bib120) 2020; 21
Chen, Acciani, Le Cras, Lutzko, Perl (bib41) 2012; 47
Zacharias, Frank, Zepp, Morley, Alkhaleel, Kong, Zhou, Cantu, Morrisey (bib293) 2018; 555
de Souza Junior, Mazucato, Santana, Oliver, Jamur (bib57) 2017; 18
Klose, Kiss, Schwierzeck, Ebert, Hoyler, d’Hargues, Göppert, Croxford, Waisman, Tanriver, Diefenbach (bib139) 2013; 494
Wang, Morse, Bolland (bib269) 2020; 41
Halai, Whiteford, Ma, Nourshargh, Woodfin (bib101) 2014; 127
Bellusci, Henderson, Winnier, Oikawa, Hogan (bib17) 1996; 122
Minoo, Su, Drum, Bringas, Kimura (bib164) 1999; 209
Rawlins, Hogan (bib206) 2008; 295
Chen, Korfhagen, Xu, Kitzmiller, Wert, Maeda, Gregorieff, Clevers, Whitsett (bib39) 2009; 119
Snyder, Farber (bib237) 2019; 59
Zepp, Zacharias, Frank, Cavanaugh, Zhou, Morley, Morrisey (bib296) 2017; 170
Paik, Tian, Williams, Rhee, Zhang, Liu, Mishra, Wu, Red-Horse, Wu (bib190) 2020; 142
Matsuba, Takizawa, Thurlbeck (bib157) 1972; 27
Song, Yao, Lin, Gacayan, Chen, Chuang (bib238) 2012; 109
Artis, Spits (bib7) 2015; 517
de la Cuesta, Passalacqua, Rodor, Bhushan, Denby, Baker (bib56) 2019; 17
Chen, Korfhagen, Karp, Impey, Xu, Randell, Kitzmiller, Maeda, Haitchi, Sridharan (bib42) 2014; 189
Riccetti, Gokey, Aronow, Perl (bib214) 2020; 91-92
Vila Ellis, Cain, Hutchison, Flodby, Crandall, Borok, Zhou, Ostrin, Wythe, Chen (bib261) 2020; 52
Bellusci, Furuta, Rush, Henderson, Winnier, Hogan (bib18) 1997; 124
Bolte, Whitsett, Kalin, Kalinichenko (bib22) 2018; 228
Wilson, Stephenson, Higuero, Feghali-Bostwick, Hung, Schnapp (bib281) 2018; 315
Eberl, Colonna, Di Santo, McKenzie (bib68) 2015; 348
Noguchi, Sumiyama, Morimoto (bib180) 2015; 13
Ochs, Nyengaard, Jung, Knudsen, Voigt, Wahlers, Richter, Gundersen (bib183) 2004; 169
Nureki, Tomer, Venosa, Katzen, Russo, Jamil, Barrett, Nguyen, Kopp, Mulugeta, Beers (bib182) 2018; 128
Chapman, Li, Alexander, Brumwell, Lorizio, Tan, Sonnenberg, Wei, Vu (bib38) 2011; 121
Tata, Rajagopal (bib250) 2017; 144
Zengin, Chalajour, Gehling, Ito, Treede, Lauke, Weil, Reichenspurner, Kilic, Ergün (bib295) 2006; 133
Weibel (bib273) 2009; 139
Endale, Ahlfeld, Bao, Chen, Green, Bess, Weirauch, Xu, Perl (bib72) 2017; 425
Oherle, Acker, Bonfield, Wang, Gray, Lang, Bridges, Lewkowich, Xu, Ahlfeld (bib185) 2020; 52
Anderson, Lynch, Engelhardt (bib4) 2017; 56
Branchfield, Li, Lungova, Verheyden, McCulley, Sun (bib25) 2016; 409
Lam, Baumgarth (bib143) 2019; 202
Popova, Bentley, Cui, Richardson, Linn, Lei, Chen, Goldsmith, Pryhuber, Hershenson (bib200) 2014; 307
Rickert, Roes, Rajewsky (bib215) 1997; 25
Ushakumary, Riccetti, Perl (bib258) 2021; 10
Tan, Krasnow (bib249) 2016; 143
Du, Clair, Al Alam, Danopoulos, Schnell, Kitzmiller, Misra, Bhattacharya, Warburton, Mariani (bib65) 2019; 317
Rawlins, Clark, Xue, Hogan (bib207) 2009; 136
Chung, Hogan (bib45) 2018; 59
Lee, McGarry (bib146) 2007; 109
Franks, Colby, Travis, Tuder, Reynolds, Brody, Cardoso, Crystal, Drake, Engelhardt (bib80) 2008; 5
Hume, Gibbings, Jakubzick, Tuder, Curran-Everett, Henson, Smith, Janssen (bib116) 2020; 201
Habermann, Gutierrez, Bui, Yahn, Winters, Calvi, Peter, Chung, Taylor, Jetter (bib97) 2019
Caton, Smith-Raska, Reizis (bib35) 2007; 204
El Agha, Moiseenko, Kheirollahi, De Langhe, Crnkovic, Kwapiszewska, Szibor, Kosanovic, Schwind, Schermuly (bib71) 2017; 20
Liu, Liu, Cui, Huang, Yao, Guo, Qin, Li, Yang, Pu (bib152) 2019; 51
McCauley, Alysandratos, Jacob, Hawkins, Caballero, Vedaie, Yang, Slovik, Morley, Carraro (bib159) 2018; 10
Zhou, Ma, Rajagopal, Wu, Domian, Rivera-Feliciano, Jiang, von Gise, Ikeda, Chien, Pu (bib299) 2008; 454
Srinivasan, Escobedo, Yang, Interiano, Dillard, Finkelstein, Mukatira, Gil, Nurmi, Alitalo, Oliver (bib243) 2014; 28
Komi, Mortaz, Amani, Tiotiu, Folkerts, Adcock (bib140) 2020; 58
Flodby, Borok, Banfalvi, Zhou, Gao, Minoo, Ann, Morrisey, Crandall (bib77) 2010; 43
Cui, Liu, Lamattina, Visner, El-Chemaly (bib54) 2017; 14
Wendling, Bornert, Chambon, Metzger (bib275) 2009; 47
Eberl, Di Santo, Vivier (bib69) 2015; 16
Khan (bib133) 2020; 18
Constantinides, McDonald, Verhoef, Bendelac (bib51) 2014; 508
Mahlakõiv, Flamar, Johnston, Moriyama, Putzel, Bryce, Artis (bib155) 2019; 4
Misharin, Morales-Nebreda, Reyfman, Cuda, Walter, McQuattie-Pimentel, Chen, Anekalla, Joshi, Williams (bib166) 2017; 214
Montoro, Haber, Biton, Vinarsky, Lin, Birket, Yuan, Chen, Leung, V
Patel (10.1016/j.devcel.2021.11.007_bib194) 2018; 38
Popova (10.1016/j.devcel.2021.11.007_bib200) 2014; 307
Lee (10.1016/j.devcel.2021.11.007_bib148) 2017; 170
Popescu (10.1016/j.devcel.2021.11.007_bib199) 2019; 574
Anderson (10.1016/j.devcel.2021.11.007_bib4) 2017; 56
Shivaraju (10.1016/j.devcel.2021.11.007_bib233) 2021; 371
Westphalen (10.1016/j.devcel.2021.11.007_bib276) 2014; 124
Biasin (10.1016/j.devcel.2021.11.007_bib21) 2020; 318
Endale (10.1016/j.devcel.2021.11.007_bib72) 2017; 425
Ghosn (10.1016/j.devcel.2021.11.007_bib84) 2019; 146
Yang (10.1016/j.devcel.2021.11.007_bib284) 2012; 120
Bellusci (10.1016/j.devcel.2021.11.007_bib19) 1997; 124
Torday (10.1016/j.devcel.2021.11.007_bib252) 2016; 340
Hong (10.1016/j.devcel.2021.11.007_bib112) 2001; 24
Snyder (10.1016/j.devcel.2021.11.007_bib237) 2019; 59
Rane (10.1016/j.devcel.2021.11.007_bib202) 2019; 316
Shannon (10.1016/j.devcel.2021.11.007_bib230) 1994; 166
Lechner (10.1016/j.devcel.2021.11.007_bib144) 2017; 21
Musumeci (10.1016/j.devcel.2021.11.007_bib172) 2019; 10
Jakubzick (10.1016/j.devcel.2021.11.007_bib125) 2013; 39
Moiseenko (10.1016/j.devcel.2021.11.007_bib167) 2017; 35
Huang (10.1016/j.devcel.2021.11.007_bib115) 2018; 359
Kathiriya (10.1016/j.devcel.2021.11.007_bib129) 2020; 26
Kuo (10.1016/j.devcel.2021.11.007_bib141) 2015; 163
Ntokou (10.1016/j.devcel.2021.11.007_bib181) 2015; 309
Basil (10.1016/j.devcel.2021.11.007_bib15) 2020; 26
Kalna (10.1016/j.devcel.2021.11.007_bib127) 2019; 124
Khansaheb (10.1016/j.devcel.2021.11.007_bib134) 2011; 300
Desai (10.1016/j.devcel.2021.11.007_bib60) 2014; 507
Inclan-Rico (10.1016/j.devcel.2021.11.007_bib120) 2020; 21
Hawkins (10.1016/j.devcel.2021.11.007_bib103) 2020; 28
Sontake (10.1016/j.devcel.2021.11.007_bib240) 2018; 3
Bal (10.1016/j.devcel.2021.11.007_bib9) 2016; 17
Chen (10.1016/j.devcel.2021.11.007_bib41) 2012; 47
Lynch (10.1016/j.devcel.2021.11.007_bib154) 2018; 22
Misharin (10.1016/j.devcel.2021.11.007_bib166) 2017; 214
Bandyopadhyay (10.1016/j.devcel.2021.11.007_bib11) 2018; 315
McGinty (10.1016/j.devcel.2021.11.007_bib160) 2020; 52
Bugya (10.1016/j.devcel.2021.11.007_bib27) 2021; 9
Nakano (10.1016/j.devcel.2021.11.007_bib174) 1985; 162
Ostedgaard (10.1016/j.devcel.2021.11.007_bib188) 2017; 114
Veres (10.1016/j.devcel.2021.11.007_bib260) 2011; 179
Chen (10.1016/j.devcel.2021.11.007_bib42) 2014; 189
Montoro (10.1016/j.devcel.2021.11.007_bib169) 2018; 560
Weaver (10.1016/j.devcel.2021.11.007_bib272) 1999; 126
Minoo (10.1016/j.devcel.2021.11.007_bib164) 1999; 209
Cassandras (10.1016/j.devcel.2021.11.007_bib34) 2020; 22
Gerbe (10.1016/j.devcel.2021.11.007_bib82) 2009; 137
Olson (10.1016/j.devcel.2021.11.007_bib187) 2011; 20
Finkbeiner (10.1016/j.devcel.2021.11.007_bib76) 2010; 46
GeurtsvanKessel (10.1016/j.devcel.2021.11.007_bib83) 2008; 1
Li (10.1016/j.devcel.2021.11.007_bib150) 2018; 7
Borthwick (10.1016/j.devcel.2021.11.007_bib24) 2001; 24
Mahlakõiv (10.1016/j.devcel.2021.11.007_bib155) 2019; 4
Ray (10.1016/j.devcel.2021.11.007_bib209) 2016; 7
Kimura (10.1016/j.devcel.2021.11.007_bib137) 1996; 10
Bellusci (10.1016/j.devcel.2021.11.007_bib17) 1996; 122
Nabhan (10.1016/j.devcel.2021.11.007_bib173) 2018; 359
Monticelli (10.1016/j.devcel.2021.11.007_bib168) 2011; 12
Mazzurana (10.1016/j.devcel.2021.11.007_bib158) 2021; 31
Uribe-Querol (10.1016/j.devcel.2021.11.007_bib257) 2015; 2015
Yang (10.1016/j.devcel.2021.11.007_bib285) 2018; 44
Lee (10.1016/j.devcel.2021.11.007_bib147) 2014; 10
Riccetti (10.1016/j.devcel.2021.11.007_bib214) 2020; 91-92
Widdicombe (10.1016/j.devcel.2021.11.007_bib278) 2019; 316
Hegab (10.1016/j.devcel.2021.11.007_bib106) 2012; 17
Rock (10.1016/j.devcel.2021.11.007_bib218) 2011; 108
Chapman (10.1016/j.devcel.2021.11.007_bib38) 2011; 121
Ouadah (10.1016/j.devcel.2021.11.007_bib189) 2019; 179
McCauley (10.1016/j.devcel.2021.11.007_bib159) 2018; 10
Betsholtz (10.1016/j.devcel.2021.11.007_bib20) 1995; 39
Rawlins (10.1016/j.devcel.2021.11.007_bib208) 2009; 4
Weibel (10.1016/j.devcel.2021.11.007_bib273) 2009; 139
Gasteiger (10.1016/j.devcel.2021.11.007_bib81) 2015; 350
Hume (10.1016/j.devcel.2021.11.007_bib116) 2020; 201
Song (10.1016/j.devcel.2021.11.007_bib238) 2012; 109
Bazigou (10.1016/j.devcel.2021.11.007_bib16) 2011; 121
De Val (10.1016/j.devcel.2021.11.007_bib58) 2009; 16
Arman (10.1016/j.devcel.2021.11.007_bib6) 1999; 96
Bankova (10.1016/j.devcel.2021.11.007_bib12) 2018; 3
Itkin (10.1016/j.devcel.2021.11.007_bib122) 2016; 37
Giangreco (10.1016/j.devcel.2021.11.007_bib85) 2009; 106
Ardain (10.1016/j.devcel.2021.11.007_bib5) 2020; 159
Cohen (10.1016/j.devcel.2021.11.007_bib50) 2018; 175
Hogan (10.1016/j.devcel.2021.11.007_bib110) 2014; 15
Sabatel (10.1016/j.devcel.2021.11.007_bib221) 2017; 46
Komi (10.1016/j.devcel.2021.11.007_bib140) 2020; 58
Fortunati (10.1016/j.devcel.2021.11.007_bib78) 2009; 155
Snippert (10.1016/j.devcel.2021.11.007_bib236) 2010; 327
Chairakaki (10.1016/j.devcel.2021.11.007_bib36) 2018; 142
Jain (10.1016/j.devcel.2021.11.007_bib124) 2015; 6
Tata (10.1016/j.devcel.2021.11.007_bib250) 2017; 144
Hung (10.1016/j.devcel.2021.11.007_bib117) 2013; 188
Rosales (10.1016/j.devcel.2021.11.007_bib220) 2018; 9
Audie (10.1016/j.devcel.2021.11.007_bib8) 1993; 41
Stump (10.1016/j.devcel.2021.11.007_bib246) 2017; 57
Chiu (10.1016/j.devcel.2021.11.007_bib44) 2015; 16
Yao (10.1016/j.devcel.2021.11.007_bib286) 2014; 114
Gomez Perdiguero (10.1016/j.devcel.2021.11.007_bib90) 2015; 518
Ivanovs (10.1016/j.devcel.2021.11.007_bib123) 2017; 144
Flodby (10.1016/j.devcel.2021.11.007_bib77) 2010; 43
Lee (10.1016/j.devcel.2021.11.007_bib146) 2007; 109
Lynch (10.1016/j.devcel.2021.11.007_bib153) 2016; 34
Sajti (10.1016/j.devcel.2021.11.007_bib222) 2020; 21
Gillich (10.1016/j.devcel.2021.11.007_bib87) 2020; 586
Halai (10.1016/j.devcel.2021.11.007_bib101) 2014; 127
Engelhardt (10.1016/j.devcel.2021.11.007_bib74) 1995; 121
Wen (10.1016/j.devcel.2021.11.007_bib274) 2021; 94
Meyrick (10.1016/j.devcel.2021.11.007_bib163) 1969; 24
Wang (10.1016/j.devcel.2021.11.007_bib267) 2018; 115
Goldfarbmuren (10.1016/j.devcel.2021.11.007_bib89) 2020; 11
Cao (10.1016/j.devcel.2021.11.007_bib31) 2019; 566
Silver (10.1016/j.devcel.2021.11.007_bib234) 2016; 17
Chen (10.1016/j.devcel.2021.11.007_bib43) 2014; 28
Ochs (10.1016/j.devcel.2021.11.007_bib183) 2004; 169
Rock (10.1016/j.devcel.2021.11.007_bib216) 2009; 106
Schlitzer (10.1016/j.devcel.2021.11.007_bib226) 2013; 38
Spits (10.1016/j.devcel.2021.11.007_bib242) 2013; 13
Di Stefano (10.1016/j.devcel.2021.11.007_bib61) 2009; 157
Dzierzak (10.1016/j.devcel.2021.11.007_bib66) 2018; 22
Dahlgren (10.1016/j.devcel.2021.11.007_bib55) 2019; 50
Khan (10.1016/j.devcel.2021.11.007_bib133) 2020; 18
Cisse (10.1016/j.devcel.2021.11.007_bib48) 2008; 135
Imanishi (10.1016/j.devcel.2021.11.007_bib119) 2020; 41
de la Cuesta (10.1016/j.devcel.2021.11.007_bib56) 2019; 17
Salwig (10.1016/j.devcel.2021.11.007_bib223) 2019; 38
Srinivasan (10.1016/j.devcel.2021.11.007_bib243) 2014; 28
Bolte (10.1016/j.devcel.2021.11.007_bib22) 2018; 228
Pardo-Saganta (10.1016/j.devcel.2021.11.007_bib191) 2015; 523
Allard (10.1016/j.devcel.2021.11.007_bib2) 2018; 9
Wendling (10.1016/j.devcel.2021.11.007_bib275) 2009; 47
Lam (10.1016/j.devcel.2021.11.007_bib143) 2019; 202
Wang (10.1016/j.devcel.2021.11.007_bib268) 2020; 9
Zuo (10.1016/j.devcel.2021.11.007_bib301) 2015; 517
Chung (10.1016/j.devcel.2021.11.007_bib46) 2018; 145
Tan (10.1016/j.devcel.2021.11.007_bib249) 2016; 143
Sheikh (10.1016/j.devcel.2021.11.007_bib232) 2015; 7
El Agha (10.1016/j.devcel.2021.11.007_bib71) 2017; 20
Matsuba (10.1016/j.devcel.2021.11.007_bib157) 1972; 27
Paik (10.1016/j.devcel.2021.11.007_bib190) 2020; 142
Tos (10.1016/j.devcel.2021.11.007_bib253) 1966; 68
Eberl (10.1016/j.devcel.2021.11.007_bib69) 2015; 16
Neal (10.1016/j.devcel.2021.11.007_bib177) 2019; 10
Wang (10.1016/j.devcel.2021.11.007_bib269) 2020; 41
Naski (10.1016/j.devcel.2021.11.007_bib176) 1998; 125
Travaglini (10.1016/j.devcel.2021.11.007_bib255) 2020; 587
Franks (10.1016/j.devcel.2021.11.007_bib80) 2008; 5
Kato (10.1016/j.devcel.2021.11.007_bib131) 2018; 9
Klose (10.1016/j.devcel.2021.11.007_bib139) 2013; 494
Rodrigues (10.1016/j.devcel.2021.11.007_bib219) 2018; 19
Rawlins (10.1016/j.devcel.2021.11.007_bib205) 2005; 233
Borthwick (10.1016/j.devcel.2021.11.007_bib23) 1999; 20
Rock (10.1016/j.devcel.2021.11.007_bib217) 2010; 3
Chung (10.1016/j.devcel.2021.11.007_bib45) 2018; 59
Okuda (10.1016/j.devcel.2021.11.007_bib186) 2019; 199
Yudanin (10.1016/j.devcel.2021.11.007_bib292) 2019; 50
Draijer (10.1016/j.devcel.2021.11.007_bib63) 2017; 140
Zhou (10.1016/j.devcel.2021.11.007_bib299) 2008; 454
Zhu (10.1016/j.devcel.2021.11.007_bib300) 2008; 16
Engelhardt (10.1016/j.devcel.2021.11.007_bib73) 1992; 2
Park (10.1016/j.devcel.2021.11.007_bib192) 2019; 316
Habermann (10.1016/j.devcel.2021.11.007_bib98) 2020; 6
Branchfield (10.1016/j.devcel.2021.11.007_bib25) 2016; 409
Xi (10.1016/j.devcel.2021.11.007_bib282) 2017; 19
Balan (10.1016/j.devcel.2021.11.007_bib10) 2019; 348
Trapnell (10.1016/j.devcel.2021.11.007_bib254) 2019; 5
Zemmour (10.1016/j.devcel.2021.11.007_bib294) 2020; 63
Li (10.1016/j.devcel.2021.11.007_bib149) 2015; 33
Greif (10.1016/j.devcel.2021.11.007_bib94) 2012; 23
Eberl (10.1016/j.devcel.2021.11.007_bib68) 2015; 348
Wilson (10.1016/j.devcel.2021.11.007_bib281) 2018; 315
Holt (10.1016/j.devcel.2021.11.007_bib111) 2000; 55
Kiyokawa (10.1016/j.devcel.2021.11.007_bib138) 2021; 56
Marone (10.1016/j.devcel.2021.11.007_bib156) 2020; 11
Cai (10.1016/j.devcel.2021.11.007_bib29) 2016; 9
Ingram (10.1016/j.devcel.2021.11.007_bib121) 2005; 105
Kalucka (10.1016/j.devcel.2021.11.007_bib128) 2020; 180
Cieri (10.1016/j.devcel.2021.11.007_bib47) 2019; 59
von Gise (10.1016/j.devcel.2021.11.007_bib264) 2016; 54
Hagan (10.1016/j.devcel.2021.11.007_bib99) 2019; 248
Ravindran (10.1016/j.devcel.2021.11.007_bib204) 2018; 9
Corada (10.1016/j.devcel.2021.11.007_bib52) 2014; 34
Yin (10.1016/j.devcel.2021.11.007_bib287) 2011; 138
Hagan (10.1016/j.devcel.2021.11.007_bib100) 2019; 147
Guha (10.1016/j.devcel.2021.11.007_bib95) 2012; 109
Rawlins (10.1016/j.devcel.2021.11.007_bib207) 2009; 136
Chen (10.1016/j.devcel.2021.11.007_bib39) 2009; 119
Huang (10.1016/j.devcel.2021.1
References_xml – volume: 58
  start-page: 377
  year: 2020
  end-page: 387
  ident: bib140
  article-title: The Role of Mast Cells in IgE-Independent Lung Diseases
  publication-title: Clin. Rev. Allergy Immunol.
– volume: 435
  start-page: 98
  year: 2005
  end-page: 104
  ident: bib289
  article-title: Suppression of Notch signalling by the COUP-TFII transcription factor regulates vein identity
  publication-title: Nature
– volume: 95
  start-page: 1241
  year: 2015
  end-page: 1319
  ident: bib279
  article-title: Airway Gland Structure and Function
  publication-title: Physiol. Rev.
– volume: 479
  start-page: 189
  year: 2011
  end-page: 193
  ident: bib259
  article-title: Distinct stem cells contribute to mammary gland development and maintenance
  publication-title: Nature
– volume: 140
  start-page: 3051
  year: 2013
  end-page: 3061
  ident: bib70
  article-title: Notch controls retinal blood vessel maturation and quiescence
  publication-title: Development
– volume: 125
  start-page: 4977
  year: 1998
  end-page: 4988
  ident: bib176
  article-title: Repression of hedgehog signaling and BMP4 expression in growth plate cartilage by fibroblast growth factor receptor 3
  publication-title: Development
– volume: 199
  start-page: 715
  year: 2019
  end-page: 727
  ident: bib186
  article-title: Localization of Secretory Mucins MUC5AC and MUC5B in Normal/Healthy Human Airways
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 12
  start-page: 6
  year: 2011
  ident: bib161
  article-title: Logical development of the cell ontology
  publication-title: BMC Bioinformatics
– volume: 5
  start-page: 16
  year: 2019
  ident: bib254
  article-title: Pulmonary alveolar proteinosis
  publication-title: Nat. Rev. Dis. Primers
– volume: 32
  start-page: 869
  year: 2017
  end-page: 883
  ident: bib30
  article-title: myeloid cell-derived reactive oxygen species induce epithelial mutagenesis
  publication-title: Cancer Cell
– volume: 10
  start-page: 1021
  year: 2021
  end-page: 1032
  ident: bib258
  article-title: Resident interstitial lung fibroblasts and their role in alveolar stem cell niche development, homeostasis, injury, and regeneration
  publication-title: Stem Cells Transl. Med.
– volume: 124
  start-page: 1283
  year: 2014
  end-page: 1295
  ident: bib276
  article-title: Long-lived intestinal tuft cells serve as colon cancer-initiating cells
  publication-title: J. Clin. Invest.
– volume: 586
  start-page: 785
  year: 2020
  end-page: 789
  ident: bib87
  article-title: Capillary cell-type specialization in the alveolus
  publication-title: Nature
– volume: 56
  start-page: 1917
  year: 2021
  end-page: 1929
  ident: bib138
  article-title: Airway basal stem cells reutilize the embryonic proliferation regulator, Tgfbeta-Id2 axis, for tissue regeneration
  publication-title: Dev. Cell
– volume: 96
  start-page: 11895
  year: 1999
  end-page: 11899
  ident: bib6
  article-title: Fgfr2 is required for limb outgrowth and lung-branching morphogenesis
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 180
  start-page: 764
  year: 2020
  end-page: 779.e20
  ident: bib128
  article-title: Single-Cell Transcriptome Atlas of Murine Endothelial Cells
  publication-title: Cell
– volume: 163
  start-page: 394
  year: 2015
  end-page: 405
  ident: bib141
  article-title: Formation of a Neurosensory Organ by Epithelial Cell Slithering
  publication-title: Cell
– volume: 170
  start-page: 1149
  year: 2017
  end-page: 1163
  ident: bib148
  article-title: Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6
  publication-title: Cell
– volume: 91-92
  start-page: 51
  year: 2020
  end-page: 74
  ident: bib214
  article-title: The elephant in the lung: Integrating lineage-tracing, molecular markers, and single cell sequencing data to identify distinct fibroblast populations during lung development and regeneration
  publication-title: Matrix Biol.
– volume: 286
  start-page: L650
  year: 2004
  end-page: L657
  ident: bib288
  article-title: Role of f-box factor foxj1 in differentiation of ciliated airway epithelial cells
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 9
  start-page: 2448
  year: 2018
  ident: bib131
  article-title: Pulmonary pericytes regulate lung morphogenesis
  publication-title: Nat. Commun.
– volume: 68
  start-page: 185
  year: 1966
  end-page: , 3
  ident: bib253
  article-title: Development of the tracheal glands in man. Number, density, structure, shape, and distribution of mucous glands elucidated by quantitative studies of whole mounts
  publication-title: Acta Pathol. Microbiol. Scand.
– volume: 114
  start-page: 806
  year: 2014
  end-page: 822
  ident: bib286
  article-title: Pulmonary lymphangiectasia resulting from vascular endothelial growth factor-C overexpression during a critical period
  publication-title: Circ. Res.
– volume: 37
  start-page: 409
  year: 2016
  end-page: 420
  ident: bib122
  article-title: Nonmalignant Adult Thoracic Lymphatic Disorders
  publication-title: Clin. Chest Med.
– volume: 494
  start-page: 261
  year: 2013
  end-page: 265
  ident: bib139
  article-title: A T-bet gradient controls the fate and function of CCR6-RORγt+ innate lymphoid cells
  publication-title: Nature
– volume: 54
  start-page: 222
  year: 2016
  end-page: 230
  ident: bib264
  article-title: Contribution of Fetal, but Not Adult, Pulmonary Mesothelium to Mesenchymal Lineages in Lung Homeostasis and Fibrosis
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 318
  start-page: L684
  year: 2020
  end-page: L697
  ident: bib21
  article-title: PDGFRα and αSMA mark two distinct mesenchymal cell populations involved in parenchymal and vascular remodeling in pulmonary fibrosis
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 11
  start-page: 2485
  year: 2020
  ident: bib89
  article-title: Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium
  publication-title: Nat. Commun.
– volume: 348
  start-page: 1
  year: 2019
  end-page: 68
  ident: bib10
  article-title: Dendritic cell subsets and locations
  publication-title: Int. Rev. Cell Mol. Biol.
– volume: 55
  start-page: 688
  year: 2000
  end-page: 697
  ident: bib111
  article-title: The development of the immune system during pregnancy and early life
  publication-title: Allergy
– volume: 128
  start-page: 4008
  year: 2018
  end-page: 4024
  ident: bib182
  article-title: Expression of mutant Sftpc in murine alveolar epithelia drives spontaneous lung fibrosis
  publication-title: J. Clin. Invest.
– volume: 115
  start-page: 2407
  year: 2018
  end-page: 2412
  ident: bib267
  article-title: Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 17
  start-page: 143
  year: 2019
  ident: bib56
  article-title: Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling
  publication-title: Cell Commun. Signal.
– volume: 517
  start-page: 293
  year: 2015
  end-page: 301
  ident: bib7
  article-title: The biology of innate lymphoid cells
  publication-title: Nature
– volume: 19
  start-page: 711
  year: 2018
  end-page: 722
  ident: bib219
  article-title: Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells
  publication-title: Nat. Immunol.
– volume: 574
  start-page: 365
  year: 2019
  end-page: 371
  ident: bib199
  article-title: Decoding human fetal liver haematopoiesis
  publication-title: Nature
– volume: 517
  start-page: 616
  year: 2015
  end-page: 620
  ident: bib301
  article-title: p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration
  publication-title: Nature
– volume: 228
  start-page: 1
  year: 2018
  end-page: 20
  ident: bib22
  article-title: Transcription factors regulating embryonic development of pulmonary vasculature
  publication-title: Adv. Anat. Embryol. Cell Biol.
– volume: 47
  start-page: 476
  year: 2009
  end-page: 483
  ident: bib151
  article-title: Generation of a mouse line expressing Sox17-driven Cre recombinase with specific activity in arteries
  publication-title: Genesis
– volume: 119
  start-page: 2914
  year: 2009
  end-page: 2924
  ident: bib39
  article-title: SPDEF is required for mouse pulmonary goblet cell differentiation and regulates a network of genes associated with mucus production
  publication-title: J. Clin. Invest.
– volume: 106
  start-page: 12771
  year: 2009
  end-page: 12775
  ident: bib216
  article-title: Basal cells as stem cells of the mouse trachea and human airway epithelium
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 15
  start-page: 123
  year: 2014
  end-page: 138
  ident: bib110
  article-title: Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function
  publication-title: Cell Stem Cell
– volume: 14
  start-page: S226
  year: 2017
  end-page: S232
  ident: bib54
  article-title: Lymphatic vessels: the next frontier in lung transplant
  publication-title: Ann. Am. Thorac. Soc.
– volume: 2018
  start-page: 5160794
  year: 2018
  ident: bib229
  article-title: Lung Interstitial Macrophages: Past, Present, and Future
  publication-title: J. Immunol. Res.
– volume: 144
  start-page: 755
  year: 2017
  end-page: 766
  ident: bib250
  article-title: Plasticity in the lung: making and breaking cell identity
  publication-title: Development
– volume: 425
  start-page: 161
  year: 2017
  end-page: 175
  ident: bib72
  article-title: Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development
  publication-title: Dev. Biol.
– volume: 518
  start-page: 547
  year: 2015
  end-page: 551
  ident: bib90
  article-title: Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors
  publication-title: Nature
– volume: 127
  start-page: 620
  year: 2014
  end-page: 629
  ident: bib101
  article-title: ICAM-2 facilitates luminal interactions between neutrophils and endothelial cells in vivo
  publication-title: J. Cell Sci.
– volume: 9
  start-page: 9
  year: 2020
  ident: bib179
  article-title: Defining the role of pulmonary endothelial cell heterogeneity in the response to acute lung injury
  publication-title: eLife
– volume: 38
  start-page: e102099
  year: 2019
  ident: bib223
  article-title: Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia
  publication-title: EMBO J.
– volume: 12
  start-page: 1045
  year: 2011
  end-page: 1054
  ident: bib168
  article-title: Innate lymphoid cells promote lung-tissue homeostasis after infection with influenza virus
  publication-title: Nat. Immunol.
– volume: 124
  start-page: 53
  year: 1997
  end-page: 63
  ident: bib18
  article-title: Involvement of Sonic hedgehog (Shh) in mouse embryonic lung growth and morphogenesis
  publication-title: Development
– volume: 57
  start-page: 272
  year: 2017
  end-page: 279
  ident: bib246
  article-title: Lymphatic Changes in Respiratory Diseases: More than Just Remodeling of the Lung?
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 29
  start-page: 1283
  year: 2011
  end-page: 1293
  ident: bib104
  article-title: Novel stem/progenitor cell population from murine tracheal submucosal gland ducts with multipotent regenerative potential
  publication-title: Stem Cells
– volume: 214
  start-page: 2387
  year: 2017
  end-page: 2404
  ident: bib166
  article-title: Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span
  publication-title: J. Exp. Med.
– volume: 58
  start-page: 92
  year: 2020
  end-page: 106
  ident: bib92
  article-title: Innate B cells: the archetype of protective immune cells
  publication-title: Clin. Rev. Allergy Immunol.
– volume: 560
  start-page: 377
  year: 2018
  end-page: 381
  ident: bib198
  article-title: A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
  publication-title: Nature
– volume: 59
  start-page: 10
  year: 2019
  end-page: 28
  ident: bib47
  article-title: Pulmonary smooth muscle in vertebrates: a comparative review of structure and function
  publication-title: Integr. Comp. Biol.
– volume: 169
  start-page: 120
  year: 2004
  end-page: 124
  ident: bib183
  article-title: The number of alveoli in the human lung
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 135
  start-page: 37
  year: 2008
  end-page: 48
  ident: bib48
  article-title: Transcription factor E2-2 is an essential and specific regulator of plasmacytoid dendritic cell development
  publication-title: Cell
– volume: 34
  start-page: 2758
  year: 2016
  end-page: 2771
  ident: bib153
  article-title: Wnt Signaling Regulates Airway Epithelial Stem Cells in Adult Murine Submucosal Glands
  publication-title: Stem Cells
– volume: 49
  start-page: 190
  year: 2013
  end-page: 196
  ident: bib225
  article-title: Chemosensory brush cells of the trachea. A stable population in a dynamic epithelium
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 139
  start-page: 375
  year: 2009
  end-page: 386
  ident: bib273
  article-title: What makes a good lung?
  publication-title: Swiss Med. Wkly.
– volume: 307
  start-page: L231
  year: 2014
  end-page: L239
  ident: bib200
  article-title: Reduced platelet-derived growth factor receptor expression is a primary feature of human bronchopulmonary dysplasia
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 19
  start-page: 904
  year: 2017
  end-page: 914
  ident: bib282
  article-title: Local lung hypoxia determines epithelial fate decisions during alveolar regeneration
  publication-title: Nat. Cell Biol.
– volume: 6
  start-page: e18472
  year: 2011
  ident: bib136
  article-title: Ascl1 (Mash1) defines cells with long-term neurogenic potential in subgranular and subventricular zones in adult mouse brain
  publication-title: PLoS ONE
– volume: 300
  start-page: L370
  year: 2011
  end-page: L379
  ident: bib134
  article-title: Properties of substance P-stimulated mucus secretion from porcine tracheal submucosal glands
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 47
  start-page: 14
  year: 2009
  end-page: 18
  ident: bib275
  article-title: Efficient temporally-controlled targeted mutagenesis in smooth muscle cells of the adult mouse
  publication-title: Genesis
– volume: 5
  start-page: 763
  year: 2008
  end-page: 766
  ident: bib80
  article-title: Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function
  publication-title: Proc. Am. Thorac. Soc.
– volume: 23
  start-page: 482
  year: 2012
  end-page: 493
  ident: bib94
  article-title: Radial construction of an arterial wall
  publication-title: Dev. Cell
– volume: 47
  start-page: 517
  year: 2012
  end-page: 527
  ident: bib41
  article-title: Dynamic regulation of platelet-derived growth factor receptor α expression in alveolar fibroblasts during realveolarization
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 59
  start-page: 101
  year: 2019
  end-page: 108
  ident: bib237
  article-title: Human lung tissue resident memory T cells in health and disease
  publication-title: Curr. Opin. Immunol.
– volume: 140
  start-page: 280
  year: 2017
  end-page: 283
  ident: bib63
  article-title: Human asthma is characterized by more IRF5+ M1 and CD206+ M2 macrophages and less IL-10+ M2-like macrophages around airways compared with healthy airways
  publication-title: J. Allergy Clin. Immunol.
– volume: 356
  start-page: 541
  year: 2011
  end-page: 552
  ident: bib91
  article-title: Wnt2 signaling is necessary and sufficient to activate the airway smooth muscle program in the lung by regulating myocardin/Mrtf-B and Fgf10 expression
  publication-title: Dev. Biol.
– volume: 30
  start-page: 647
  year: 2012
  end-page: 675
  ident: bib241
  article-title: Innate lymphoid cells: emerging insights in development, lineage relationships, and function
  publication-title: Annu. Rev. Immunol.
– volume: 175
  start-page: 1031
  year: 2018
  end-page: 1044.e18
  ident: bib50
  article-title: Lung single-cell signaling interaction map reveals basophil role in macrophage imprinting
  publication-title: Cell
– volume: 29
  start-page: 65
  year: 1998
  end-page: 73
  ident: bib184
  article-title: Destruction and loss of bronchial cartilage in cystic fibrosis
  publication-title: Hum. Pathol.
– volume: 142
  start-page: 542
  year: 2018
  end-page: 556
  ident: bib36
  article-title: Plasmacytoid dendritic cells drive acute asthma exacerbations
  publication-title: J. Allergy Clin. Immunol.
– volume: 10
  start-page: 453
  year: 2019
  ident: bib177
  article-title: Venous identity requires BMP signalling through ALK3
  publication-title: Nat. Commun.
– volume: 23
  start-page: 101724
  year: 2020
  ident: bib262
  article-title: Mass Cytometry Phenotyping of Human Granulocytes Reveals Novel Basophil Functional Heterogeneity
  publication-title: iScience
– volume: 13
  start-page: 145
  year: 2013
  end-page: 149
  ident: bib242
  article-title: Innate lymphoid cells--a proposal for uniform nomenclature
  publication-title: Nat. Rev. Immunol.
– volume: 47
  start-page: 129
  year: 1999
  end-page: 137
  ident: bib62
  article-title: HTI56, an integral membrane protein specific to human alveolar type I cells
  publication-title: J. Histochem. Cytochem.
– volume: 11
  start-page: 2103
  year: 2020
  ident: bib156
  article-title: Is There a Role for Basophils in Cancer?
  publication-title: Front. Immunol.
– volume: 13
  start-page: 2679
  year: 2015
  end-page: 2686
  ident: bib180
  article-title: Directed Migration of Pulmonary Neuroendocrine Cells toward Airway Branches Organizes the Stereotypic Location of Neuroepithelial Bodies
  publication-title: Cell Rep.
– volume: 27
  start-page: 181
  year: 1972
  end-page: 184
  ident: bib157
  article-title: Oncocytes in human bronchial mucous glands
  publication-title: Thorax
– volume: 50
  start-page: 1425
  year: 2019
  end-page: 1438
  ident: bib227
  article-title: Tissue-Resident Group 2 Innate Lymphoid Cells Differentiate by Layered Ontogeny and In Situ Perinatal Priming
  publication-title: Immunity
– volume: 286
  start-page: L631
  year: 2004
  end-page: L642
  ident: bib228
  article-title: A subset of mouse tracheal epithelial basal cells generates large colonies in vitro
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 560
  start-page: 319
  year: 2018
  end-page: 324
  ident: bib169
  article-title: A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
  publication-title: Nature
– volume: 146
  start-page: dev170571
  year: 2019
  ident: bib84
  article-title: Hematopoietic stem cell-independent hematopoiesis and the origins of innate-like B lymphocytes
  publication-title: Development
– volume: 110
  start-page: 19444
  year: 2013
  end-page: 19449
  ident: bib107
  article-title: Establishment of smooth muscle and cartilage juxtaposition in the developing mouse upper airways
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 18
  start-page: 456
  year: 2020
  ident: bib133
  article-title: Regulatory T cells mediated immunomodulation during asthma: a therapeutic standpoint
  publication-title: J. Transl. Med.
– volume: 17
  start-page: 636
  year: 2016
  end-page: 645
  ident: bib9
  article-title: IL-1β, IL-4 and IL-12 control the fate of group 2 innate lymphoid cells in human airway inflammation in the lungs
  publication-title: Nat. Immunol.
– volume: 121
  start-page: 823
  year: 2005
  end-page: 835
  ident: bib135
  article-title: Identification of bronchioalveolar stem cells in normal lung and lung cancer
  publication-title: Cell
– volume: 4
  start-page: e126556
  year: 2019
  ident: bib171
  article-title: Single cell RNA sequencing identifies unique inflammatory airspace macrophage subsets
  publication-title: JCI Insight
– volume: 22
  start-page: 1295
  year: 2020
  end-page: 1306
  ident: bib34
  article-title: Gli1
  publication-title: Nat. Cell Biol.
– volume: 129
  start-page: 191
  year: 2012
  end-page: 198
  ident: bib14
  article-title: Innate IL-13-producing nuocytes arise during allergic lung inflammation and contribute to airways hyperreactivity
  publication-title: J. Allergy Clin. Immunol.
– volume: 204
  start-page: 1653
  year: 2007
  end-page: 1664
  ident: bib35
  article-title: Notch-RBP-J signaling controls the homeostasis of CD8- dendritic cells in the spleen
  publication-title: J. Exp. Med.
– volume: 295
  start-page: L231
  year: 2008
  end-page: L234
  ident: bib206
  article-title: Ciliated epithelial cell lifespan in the mouse trachea and lung
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 130
  start-page: 5088
  year: 2020
  end-page: 5099
  ident: bib132
  article-title: Contributions of alveolar epithelial cell quality control to pulmonary fibrosis
  publication-title: J. Clin. Invest.
– volume: 50
  start-page: 707
  year: 2019
  end-page: 722
  ident: bib55
  article-title: Adventitial stromal cells define group 2 innate lymphoid cell tissue niches
  publication-title: Immunity
– year: 2019
  ident: bib97
  article-title: Single-cell RNA-sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
  publication-title: bioRxiv
– volume: 9
  start-page: 1777
  year: 2018
  ident: bib2
  article-title: Alveolar macrophages in the resolution of inflammation, tissue repair, and tolerance to infection
  publication-title: Front. Immunol.
– volume: 51
  start-page: 766
  year: 2019
  ident: bib152
  article-title: Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction
  publication-title: Nat. Genet.
– volume: 124
  start-page: 1337
  year: 2019
  end-page: 1349
  ident: bib127
  article-title: The Transcription Factor ERG Regulates Super-Enhancers Associated With an Endothelial-Specific Gene Expression Program
  publication-title: Circ. Res.
– volume: 371
  start-page: eabc3172
  year: 2021
  ident: bib297
  article-title: Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus
  publication-title: Science
– volume: 320
  start-page: 72
  year: 2008
  end-page: 78
  ident: bib28
  article-title: Ascl3 expression marks a progenitor population of both acinar and ductal cells in mouse salivary glands
  publication-title: Dev. Biol.
– volume: 10
  start-page: 1222
  year: 2019
  ident: bib172
  article-title: What Makes a pDC: Recent Advances in Understanding Plasmacytoid DC Development and Heterogeneity
  publication-title: Front. Immunol.
– volume: 43
  start-page: 173
  year: 2010
  end-page: 178
  ident: bib77
  article-title: Directed expression of Cre in alveolar epithelial type 1 cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 28
  start-page: 236
  year: 2014
  end-page: 245
  ident: bib43
  article-title: Col2CreER(T2), a mouse model for a chondrocyte-specific and inducible gene deletion
  publication-title: Eur. Cell. Mater.
– volume: 34
  start-page: 2372
  year: 2014
  end-page: 2377
  ident: bib52
  article-title: Signaling pathways in the specification of arteries and veins
  publication-title: Arterioscler. Thromb. Vasc. Biol.
– volume: 9
  start-page: e62522
  year: 2020
  ident: bib268
  article-title: Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
  publication-title: eLife
– volume: 555
  start-page: 251
  year: 2018
  end-page: 255
  ident: bib293
  article-title: Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor
  publication-title: Nature
– volume: 6
  start-page: 6727
  year: 2015
  ident: bib124
  article-title: Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung
  publication-title: Nat. Commun.
– volume: 16
  start-page: 161
  year: 2015
  end-page: 169
  ident: bib114
  article-title: IL-25-responsive, lineage-negative KLRG1(hi) cells are multipotential ‘inflammatory’ type 2 innate lymphoid cells
  publication-title: Nat. Immunol.
– volume: 155
  start-page: 559
  year: 2009
  end-page: 566
  ident: bib78
  article-title: Human neutrophils switch to an activated phenotype after homing to the lung irrespective of inflammatory disease
  publication-title: Clin. Exp. Immunol.
– volume: 123
  start-page: 3025
  year: 2013
  end-page: 3036
  ident: bib13
  article-title: Type 2 alveolar cells are stem cells in adult lung
  publication-title: J. Clin. Invest.
– volume: 49
  start-page: 564
  year: 2019
  end-page: 581
  ident: bib195
  article-title: T cells in severe childhood asthma
  publication-title: Clin. Exp. Allergy
– volume: 157
  start-page: 60
  year: 2014
  end-page: 63
  ident: bib256
  article-title: Environments of B cell development
  publication-title: Immunol. Lett.
– volume: 1
  start-page: 719
  year: 2012
  end-page: 724
  ident: bib105
  article-title: Isolation and in vitro characterization of basal and submucosal gland duct stem/progenitor cells from human proximal airways
  publication-title: Stem Cells Transl. Med.
– volume: 359
  start-page: 1118
  year: 2018
  end-page: 1123
  ident: bib173
  article-title: Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells
  publication-title: Science
– volume: 309
  start-page: L942
  year: 2015
  end-page: L958
  ident: bib181
  article-title: Characterization of the platelet-derived growth factor receptor-α-positive cell lineage during murine late lung development
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 529
  start-page: 221
  year: 2016
  end-page: 225
  ident: bib265
  article-title: Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit
  publication-title: Nature
– volume: 316
  start-page: L990
  year: 2019
  end-page: L998
  ident: bib278
  article-title: Early studies of airway submucosal glands
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 9
  start-page: ra40
  year: 2016
  ident: bib29
  article-title: FOXF1 maintains endothelial barrier function and prevents edema after lung injury
  publication-title: Sci. Signal.
– volume: 166
  start-page: 600
  year: 1994
  end-page: 614
  ident: bib230
  article-title: Induction of alveolar type II cell differentiation in fetal tracheal epithelium by grafted distal lung mesenchyme
  publication-title: Dev. Biol.
– volume: 41
  start-page: 601
  year: 2020
  end-page: 613
  ident: bib269
  article-title: Transcriptional Control of Mature B Cell Fates
  publication-title: Trends Immunol.
– volume: 10
  start-page: 1007
  year: 2014
  end-page: 1017
  ident: bib147
  article-title: The prostate basal cell (BC) heterogeneity and the p63-positive BC differentiation spectrum in mice
  publication-title: Int. J. Biol. Sci.
– volume: 20
  start-page: 655
  year: 2017
  end-page: 662
  ident: bib53
  article-title: PDGFRβ-P2A-CreER
  publication-title: Angiogenesis
– volume: 56
  start-page: 716
  year: 2017
  end-page: 726
  ident: bib4
  article-title: Multipotent myoepithelial progenitor cells are born early during airway submucosal gland development
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 20
  start-page: 815
  year: 2011
  end-page: 826
  ident: bib187
  article-title: PDGFRβ signaling regulates mural cell plasticity and inhibits fat development
  publication-title: Dev. Cell
– volume: 17
  start-page: 1101
  year: 2012
  end-page: 1113
  ident: bib106
  article-title: Repair and regeneration of tracheal surface epithelium and submucosal glands in a mouse model of hypoxic-ischemic injury
  publication-title: Respirology
– volume: 20
  start-page: 1181
  year: 1999
  end-page: 1189
  ident: bib23
  article-title: Murine submucosal glands are clonally derived and show a cystic fibrosis gene-dependent distribution pattern
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 359
  start-page: 114
  year: 2018
  end-page: 119
  ident: bib115
  article-title: S1P-dependent interorgan trafficking of group 2 innate lymphoid cells supports host defense
  publication-title: Science
– volume: 39
  start-page: 817
  year: 1995
  end-page: 825
  ident: bib20
  article-title: Role of platelet-derived growth factors in mouse development
  publication-title: Int. J. Dev. Biol.
– volume: 38
  start-page: 970
  year: 2013
  end-page: 983
  ident: bib226
  article-title: IRF4 transcription factor-dependent CD11b+ dendritic cells in human and mouse control mucosal IL-17 cytokine responses
  publication-title: Immunity
– volume: 28
  start-page: 1775
  year: 2021
  end-page: 1789
  ident: bib197
  article-title: Age-dependent alveolar epithelial plasticity orchestrates lung homeostasis and regeneration
  publication-title: Cell Stem Cell
– volume: 6
  start-page: eaba1972
  year: 2020
  ident: bib98
  article-title: Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
  publication-title: Sci. Adv.
– volume: 248
  start-page: 882
  year: 2019
  end-page: 893
  ident: bib99
  article-title: Generation and validation of novel conditional flox and inducible Cre alleles targeting fibroblast growth factor 18 (Fgf18)
  publication-title: Dev. Dyn.
– volume: 16
  start-page: 18
  year: 2015
  end-page: 26
  ident: bib44
  article-title: Antiviral B cell and T cell immunity in the lungs
  publication-title: Nat. Immunol.
– volume: 35
  start-page: 1566
  year: 2017
  end-page: 1578
  ident: bib167
  article-title: Origin and characterization of alpha smooth muscle actin-positive cells during murine lung development
  publication-title: Stem Cells
– volume: 1
  start-page: e00043-16
  year: 2016
  ident: bib175
  article-title: MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses
  publication-title: mSystems
– volume: 4
  start-page: 525
  year: 2009
  end-page: 534
  ident: bib208
  article-title: The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium
  publication-title: Cell Stem Cell
– volume: 350
  start-page: 981
  year: 2015
  end-page: 985
  ident: bib81
  article-title: Tissue residency of innate lymphoid cells in lymphoid and nonlymphoid organs
  publication-title: Science
– volume: 4
  start-page: eaax0416
  year: 2019
  ident: bib155
  article-title: Stromal cells maintain immune cell homeostasis in adipose tissue via production of interleukin-33
  publication-title: Sci. Immunol.
– volume: 202
  start-page: 1636
  year: 2020
  end-page: 1645
  ident: bib59
  article-title: A single-cell atlas of the human healthy airways
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 33
  start-page: 736
  year: 2010
  end-page: 751
  ident: bib266
  article-title: Regulated expression of nuclear receptor RORγt confers distinct functional fates to NK cell receptor-expressing RORγt(+) innate lymphocytes
  publication-title: Immunity
– volume: 121
  start-page: 2031
  year: 1995
  end-page: 2046
  ident: bib74
  article-title: Progenitor cells of the adult human airway involved in submucosal gland development
  publication-title: Development
– volume: 10
  start-page: 3130
  year: 2020
  ident: bib244
  article-title: Mouse Models and Tools for the
  publication-title: Front. Immunol.
– year: 2020
  ident: bib102
  article-title: Integrated analysis of multimodal single-cell data
  publication-title: bioRxiv
– volume: 46
  start-page: 457
  year: 2017
  end-page: 473
  ident: bib221
  article-title: Exposure to Bacterial CpG DNA Protects from Airway Allergic Inflammation by Expanding Regulatory Lung Interstitial Macrophages
  publication-title: Immunity
– volume: 16
  start-page: 1
  year: 2015
  end-page: 5
  ident: bib69
  article-title: The brave new world of innate lymphoid cells
  publication-title: Nat. Immunol.
– volume: 142
  start-page: 1848
  year: 2020
  end-page: 1862
  ident: bib190
  article-title: Single-Cell RNA Sequencing Unveils Unique Transcriptomic Signatures of Organ-Specific Endothelial Cells
  publication-title: Circulation
– volume: 142
  start-page: 1545
  year: 2020
  end-page: 1561
  ident: bib245
  article-title: A Notch3-Marked Subpopulation of Vascular Smooth Muscle Cells Is the Cell of Origin for Occlusive Pulmonary Vascular Lesions
  publication-title: Circulation
– volume: 54
  start-page: 13
  year: 2016
  end-page: 24
  ident: bib290
  article-title: Flow Cytometric Analysis of Myeloid Cells in Human Blood, Bronchoalveolar Lavage, and Lung Tissues
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 124
  start-page: 4867
  year: 1997
  end-page: 4878
  ident: bib19
  article-title: Fibroblast growth factor 10 (FGF10) and branching morphogenesis in the embryonic mouse lung
  publication-title: Development
– volume: 35
  start-page: 4507
  year: 2019
  end-page: 4508
  ident: bib49
  article-title: Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data
  publication-title: Bioinformatics
– volume: 202
  start-page: 351
  year: 2019
  end-page: 359
  ident: bib143
  article-title: The Multifaceted B Cell Response to Influenza Virus
  publication-title: J. Immunol.
– volume: 17
  start-page: 626
  year: 2016
  end-page: 635
  ident: bib234
  article-title: Inflammatory triggers associated with exacerbations of COPD orchestrate plasticity of group 2 innate lymphoid cells in the lungs
  publication-title: Nat. Immunol.
– volume: 126
  start-page: 4005
  year: 1999
  end-page: 4015
  ident: bib272
  article-title: Bmp signaling regulates proximal-distal differentiation of endoderm in mouse lung development
  publication-title: Development
– volume: 10
  start-page: 2458
  year: 2019
  ident: bib224
  article-title: Challenges and Opportunities for Consistent Classification of Human B Cell and Plasma Cell Populations
  publication-title: Front. Immunol.
– volume: 70
  start-page: 11
  year: 2021
  end-page: 18
  ident: bib280
  article-title: The role of CD8 + T lymphocytes in chronic obstructive pulmonary disease: a systematic review
  publication-title: Inflamm. Res.
– volume: 50
  start-page: 505
  year: 2019
  end-page: 519
  ident: bib292
  article-title: Spatial and Temporal Mapping of Human Innate Lymphoid Cells Reveals Elements of Tissue Specificity
  publication-title: Immunity
– volume: 21
  start-page: 120
  year: 2017
  end-page: 134
  ident: bib144
  article-title: Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy
  publication-title: Cell Stem Cell
– volume: 99
  start-page: 513
  year: 2019
  end-page: 554
  ident: bib277
  article-title: Building and Regenerating the Lung Cell by Cell
  publication-title: Physiol. Rev.
– volume: 5
  start-page: eaaw3851
  year: 2019
  ident: bib203
  article-title: Single-cell connectomic analysis of adult mammalian lungs
  publication-title: Sci. Adv.
– volume: 197
  start-page: 1045
  year: 2018
  end-page: 1057
  ident: bib248
  article-title: Depletion of Airway Submucosal Glands and TP63
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 25
  start-page: 1317
  year: 1997
  end-page: 1318
  ident: bib215
  article-title: B lymphocyte-specific, Cre-mediated mutagenesis in mice
  publication-title: Nucleic Acids Res.
– volume: 10
  start-page: 1579
  year: 2018
  end-page: 1595
  ident: bib159
  article-title: Single-Cell Transcriptomic Profiling of Pluripotent Stem Cell-Derived SCGB3A2+ Airway Epithelium
  publication-title: Stem Cell Reports
– volume: 9
  start-page: 174
  year: 2021
  ident: bib27
  article-title: Multiple levels of immunological memory and their association with vaccination
  publication-title: Vaccines (Basel)
– volume: 59
  start-page: 706
  year: 2018
  end-page: 712
  ident: bib45
  article-title: Ager-CreER
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 18
  start-page: 2674
  year: 2017
  ident: bib57
  article-title: Mast cells interact with endothelial cells to accelerate in vitro angiogenesis
  publication-title: Int. J. Mol. Sci.
– volume: 19
  start-page: 255
  year: 2019
  end-page: 265
  ident: bib178
  article-title: Heterogeneity of neutrophils
  publication-title: Nat. Rev. Immunol.
– volume: 204
  start-page: 326
  year: 2021
  end-page: 338
  ident: bib270
  article-title: Generation of Pulmonary Endothelial Progenitor Cells for Cell-based Therapy Using Interspecies Mouse-Rat Chimeras
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 3
  start-page: e121252
  year: 2018
  ident: bib240
  article-title: Wilms’ tumor 1 drives fibroproliferation and myofibroblast transformation in severe fibrotic lung disease
  publication-title: JCI Insight
– volume: 523
  start-page: 597
  year: 2015
  end-page: 601
  ident: bib191
  article-title: Parent stem cells can serve as niches for their daughter cells
  publication-title: Nature
– volume: 368
  start-page: 600
  year: 2020
  end-page: 603
  ident: bib193
  article-title: Prenatal development of human immunity
  publication-title: Science
– volume: 62
  start-page: 1375
  year: 2019
  end-page: 1380
  ident: bib108
  article-title: Crouzon syndrome mouse model exhibits cartilage hyperproliferation and defective segmentation in the developing trachea
  publication-title: Sci. China Life Sci.
– volume: 7
  start-page: 817
  year: 2016
  end-page: 825
  ident: bib209
  article-title: Rare SOX2
  publication-title: Stem Cell Reports
– volume: 1122
  start-page: 41
  year: 2019
  end-page: 58
  ident: bib118
  article-title: Pericytes in the Lung
  publication-title: Adv. Exp. Med. Biol.
– volume: 147
  start-page: dev181032
  year: 2019
  ident: bib100
  article-title: Identification of an FGF18-expressing alveolar myofibroblast that is developmentally cleared during alveologenesis
  publication-title: Development
– volume: 127
  start-page: 3866
  year: 2017
  end-page: 3876
  ident: bib271
  article-title: Expression of Piwi protein MIWI2 defines a distinct population of multiciliated cells
  publication-title: J. Clin. Invest.
– volume: 114
  start-page: 6842
  year: 2017
  end-page: 6847
  ident: bib188
  article-title: Gel-forming mucins form distinct morphologic structures in airways
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 145
  start-page: dev163014
  year: 2018
  ident: bib46
  article-title: Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation
  publication-title: Development
– volume: 24
  start-page: 662
  year: 2001
  end-page: 670
  ident: bib24
  article-title: Evidence for stem-cell niches in the tracheal epithelium
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 33
  start-page: 999
  year: 2015
  end-page: 1012
  ident: bib149
  article-title: Progenitors of secondary crest myofibroblasts are developmentally committed in early lung mesoderm
  publication-title: Stem Cells
– volume: 209
  start-page: 60
  year: 1999
  end-page: 71
  ident: bib164
  article-title: Defects in tracheoesophageal and lung morphogenesis in Nkx2.1(-/-) mouse embryos
  publication-title: Dev. Biol.
– volume: 199
  start-page: 1517
  year: 2019
  end-page: 1536
  ident: bib213
  article-title: Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 1
  start-page: 442
  year: 2008
  end-page: 450
  ident: bib83
  article-title: Division of labor between dendritic cell subsets of the lung
  publication-title: Mucosal Immunol.
– volume: 6
  start-page: eaba1983
  year: 2020
  ident: bib1
  article-title: Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
  publication-title: Sci. Adv.
– volume: 22
  start-page: 639
  year: 2018
  end-page: 651
  ident: bib66
  article-title: Blood development: hematopoietic stem cell dependence and independence
  publication-title: Cell Stem Cell
– volume: 33
  start-page: 282
  year: 2020
  end-page: 293
  ident: bib3
  article-title: Resident memory B cells
  publication-title: Viral Immunol.
– volume: 52
  start-page: 275
  year: 2020
  end-page: 294
  ident: bib185
  article-title: Insulin-like Growth Factor 1 Supports a Pulmonary Niche that Promotes Type 3 Innate Lymphoid Cell Development in Newborn Lungs
  publication-title: Immunity
– volume: 2015
  start-page: 983698
  year: 2015
  ident: bib257
  article-title: Neutrophils in Cancer: Two Sides of the Same Coin
  publication-title: J. Immunol. Res.
– volume: 7
  start-page: 308ra159
  year: 2015
  ident: bib232
  article-title: Smooth muscle cell progenitors are primed to muscularize in pulmonary hypertension
  publication-title: Sci. Transl. Med.
– volume: 179
  start-page: 603
  year: 2011
  end-page: 609
  ident: bib260
  article-title: Spatiotemporal and functional behavior of airway dendritic cells visualized by two-photon microscopy
  publication-title: Am. J. Pathol.
– volume: 351
  start-page: 707
  year: 2016
  end-page: 710
  ident: bib26
  article-title: Pulmonary neuroendocrine cells function as airway sensors to control lung immune response
  publication-title: Science
– volume: 200
  start-page: 1164
  year: 2019
  end-page: 1176
  ident: bib211
  article-title: Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 500
  start-page: 589
  year: 2013
  end-page: 592
  ident: bib196
  article-title: Coordination of heart and lung co-development by a multipotent cardiopulmonary progenitor
  publication-title: Nature
– volume: 109
  start-page: 17531
  year: 2012
  end-page: 17536
  ident: bib238
  article-title: Functional characterization of pulmonary neuroendocrine cells in lung development, injury, and tumorigenesis
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 316
  start-page: L872
  year: 2019
  end-page: L885
  ident: bib192
  article-title: The Tcf21 lineage constitutes the lung lipofibroblast population
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 143
  start-page: 1318
  year: 2016
  end-page: 1327
  ident: bib249
  article-title: Developmental origin of lung macrophage diversity
  publication-title: Development
– volume: 31
  start-page: 554
  year: 2021
  end-page: 568
  ident: bib158
  article-title: Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
  publication-title: Cell Res.
– volume: 16
  start-page: 180
  year: 2009
  end-page: 195
  ident: bib58
  article-title: Transcriptional control of endothelial cell development
  publication-title: Dev. Cell
– volume: 315
  start-page: L991
  year: 2018
  end-page: L1002
  ident: bib281
  article-title: Characterization of human PDGFR-β-positive pericytes from IPF and non-IPF lungs
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 133
  start-page: 1543
  year: 2006
  end-page: 1551
  ident: bib295
  article-title: Vascular wall resident progenitor cells: a source for postnatal vasculogenesis
  publication-title: Development
– volume: 454
  start-page: 109
  year: 2008
  end-page: 113
  ident: bib299
  article-title: Epicardial progenitors contribute to the cardiomyocyte lineage in the developing heart
  publication-title: Nature
– volume: 129
  start-page: 2514
  year: 2019
  end-page: 2526
  ident: bib210
  article-title: Lymphatic impairment leads to pulmonary tertiary lymphoid organ formation and alveolar damage
  publication-title: J. Clin. Invest.
– volume: 371
  start-page: 52
  year: 2021
  end-page: 57
  ident: bib233
  article-title: Airway stem cells sense hypoxia and differentiate into protective solitary neuroendocrine cells
  publication-title: Science
– volume: 210
  start-page: 1977
  year: 2013
  end-page: 1992
  ident: bib96
  article-title: Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF
  publication-title: J. Exp. Med.
– volume: 8
  start-page: 13455
  year: 2018
  ident: bib142
  article-title: Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
  publication-title: Sci. Rep.
– volume: 189
  start-page: 301
  year: 2014
  end-page: 313
  ident: bib42
  article-title: Foxa3 induces goblet cell metaplasia and inhibits innate antiviral immunity
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 38
  start-page: 535
  year: 2016
  end-page: 537
  ident: bib283
  article-title: Basophils and mast cells in immunity and inflammation
  publication-title: Semin. Immunopathol.
– volume: 26
  start-page: 482
  year: 2020
  end-page: 502
  ident: bib15
  article-title: The cellular and physiological basis for lung repair and regeneration: past, present, and future
  publication-title: Cell Stem Cell
– volume: 507
  start-page: 190
  year: 2014
  end-page: 194
  ident: bib60
  article-title: Alveolar progenitor and stem cells in lung development, renewal and cancer
  publication-title: Nature
– volume: 587
  start-page: 619
  year: 2020
  end-page: 625
  ident: bib255
  article-title: A molecular cell atlas of the human lung from single-cell RNA sequencing
  publication-title: Nature
– volume: 22
  start-page: 653
  year: 2018
  end-page: 667
  ident: bib154
  article-title: Submucosal Gland Myoepithelial Cells Are Reserve Stem Cells That Can Regenerate Mouse Tracheal Epithelium
  publication-title: Cell Stem Cell
– volume: 2
  start-page: 240
  year: 1992
  end-page: 248
  ident: bib73
  article-title: Submucosal glands are the predominant site of CFTR expression in the human bronchus
  publication-title: Nat. Genet.
– volume: 105
  start-page: 2783
  year: 2005
  end-page: 2786
  ident: bib121
  article-title: Vessel wall-derived endothelial cells rapidly proliferate because they contain a complete hierarchy of endothelial progenitor cells
  publication-title: Blood
– volume: 28
  start-page: 2175
  year: 2014
  end-page: 2187
  ident: bib243
  article-title: The Prox1-Vegfr3 feedback loop maintains the identity and the number of lymphatic endothelial cell progenitors
  publication-title: Genes Dev.
– volume: 138
  start-page: 3169
  year: 2011
  end-page: 3177
  ident: bib287
  article-title: Mesothelial- and epithelial-derived FGF9 have distinct functions in the regulation of lung development
  publication-title: Development
– volume: 38
  start-page: 303
  year: 2018
  end-page: 331
  ident: bib194
  article-title: Airway Macrophage and Dendritic Cell Subsets in the Resting Human Lung
  publication-title: Crit. Rev. Immunol.
– volume: 137
  start-page: 2179
  year: 2009
  end-page: 2180
  ident: bib82
  article-title: DCAMKL-1 expression identifies Tuft cells rather than stem cells in the adult mouse intestinal epithelium
  publication-title: Gastroenterology
– volume: 327
  start-page: 1385
  year: 2010
  end-page: 1389
  ident: bib236
  article-title: Lgr6 marks stem cells in the hair follicle that generate all cell lineages of the skin
  publication-title: Science
– volume: 116
  start-page: 4362
  year: 2019
  end-page: 4371
  ident: bib79
  article-title: Early lineage specification defines alveolar epithelial ontogeny in the murine lung
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 28
  start-page: 79
  year: 2020
  end-page: 95
  ident: bib103
  article-title: Derivation of airway basal stem cells from human pluripotent stem cells
  publication-title: Cell Stem Cell
– volume: 20
  start-page: 852
  year: 2019
  end-page: 864
  ident: bib64
  article-title: Plasmacytoid dendritic cells develop from Ly6D
  publication-title: Nat. Immunol.
– volume: 20
  start-page: 571
  year: 2017
  ident: bib71
  article-title: Two-way conversion between lipogenic and myogenic fibroblastic phenotypes marks the progression and resolution of lung fibrosis
  publication-title: Cell Stem Cell
– volume: 43
  start-page: 48
  year: 2017
  end-page: 59
  ident: bib263
  article-title: Fgf10-Hippo Epithelial-Mesenchymal Crosstalk Maintains and Recruits Lung Basal Stem Cells
  publication-title: Dev. Cell
– volume: 7
  start-page: e36865
  year: 2018
  ident: bib150
  article-title: marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
  publication-title: eLife
– volume: 340
  start-page: 215
  year: 2016
  end-page: 219
  ident: bib252
  article-title: On the evolution of the pulmonary alveolar lipofibroblast
  publication-title: Exp. Cell Res.
– volume: 11
  start-page: 111
  year: 2013
  ident: bib298
  article-title: Spatial-temporal targeting of lung-specific mesenchyme by a Tbx4 enhancer
  publication-title: BMC Biol.
– volume: 21
  start-page: 221
  year: 2020
  end-page: 231
  ident: bib222
  article-title: Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung
  publication-title: Nat. Immunol.
– volume: 508
  start-page: 397
  year: 2014
  end-page: 401
  ident: bib51
  article-title: A committed precursor to innate lymphoid cells
  publication-title: Nature
– volume: 5
  start-page: 64
  year: 2004
  end-page: 73
  ident: bib67
  article-title: An essential function for the nuclear receptor RORgamma(t) in the generation of fetal lymphoid tissue inducer cells
  publication-title: Nat. Immunol.
– volume: 317
  start-page: L347
  year: 2019
  end-page: L360
  ident: bib65
  article-title: Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 179
  start-page: 403
  year: 2019
  end-page: 416
  ident: bib189
  article-title: Rare Pulmonary Neuroendocrine Cells Are Stem Cells Regulated by Rb, p53, and Notch
  publication-title: Cell
– volume: 315
  start-page: L576
  year: 2018
  end-page: L583
  ident: bib11
  article-title: Dissociation, cellular isolation, and initial molecular characterization of neonatal and pediatric human lung tissues
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 42
  start-page: 665
  year: 2015
  end-page: 678
  ident: bib109
  article-title: C-Myb(+) erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages
  publication-title: Immunity
– volume: 3
  start-page: 545
  year: 2010
  end-page: 556
  ident: bib217
  article-title: Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling
  publication-title: Dis. Model. Mech.
– volume: 121
  start-page: 2855
  year: 2011
  end-page: 2862
  ident: bib38
  article-title: Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice
  publication-title: J. Clin. Invest.
– volume: 144
  start-page: 2323
  year: 2017
  end-page: 2337
  ident: bib123
  article-title: Human haematopoietic stem cell development: from the embryo to the dish
  publication-title: Development
– volume: 109
  start-page: 859
  year: 2007
  end-page: 861
  ident: bib146
  article-title: When is a mouse basophil not a basophil?
  publication-title: Blood
– volume: 35
  start-page: 997
  year: 2011
  end-page: 1009
  ident: bib40
  article-title: Th17 cells mediate clade-specific, serotype-independent mucosal immunity
  publication-title: Immunity
– volume: 157
  start-page: 316
  year: 2009
  end-page: 324
  ident: bib61
  article-title: T helper type 17-related cytokine expression is increased in the bronchial mucosa of stable chronic obstructive pulmonary disease patients
  publication-title: Clin. Exp. Immunol.
– volume: 409
  start-page: 429
  year: 2016
  end-page: 441
  ident: bib25
  article-title: A three-dimensional study of alveologenesis in mouse lung
  publication-title: Dev. Biol.
– volume: 26
  start-page: 346
  year: 2020
  end-page: 358
  ident: bib129
  article-title: Distinct airway epithelial stem cells hide among club cells but mobilize to promote alveolar regeneration
  publication-title: Cell Stem Cell
– volume: 360
  start-page: 1086
  year: 2018
  ident: bib247
  article-title: Pulmonary neuroendocrine cells amplify allergic asthma responses
  publication-title: Science
– volume: 9
  start-page: 2193
  year: 2018
  ident: bib204
  article-title: An Optimized Protocol for the Isolation and Functional Analysis of Human Lung Mast Cells
  publication-title: Front. Immunol.
– volume: 212
  start-page: 482
  year: 1998
  end-page: 494
  ident: bib231
  article-title: Mesenchyme specifies epithelial differentiation in reciprocal recombinants of embryonic lung and trachea
  publication-title: Dev. Dyn.
– volume: 162
  start-page: 1025
  year: 1985
  end-page: 1043
  ident: bib174
  article-title: Fate of bone marrow-derived cultured mast cells after intracutaneous, intraperitoneal, and intravenous transfer into genetically mast cell-deficient W/Wv mice. Evidence that cultured mast cells can give rise to both connective tissue type and mucosal mast cells
  publication-title: J. Exp. Med.
– volume: 65
  start-page: 32
  year: 2010
  end-page: 38
  ident: bib93
  article-title: Increased myoepithelial cells of bronchial submucosal glands in fatal asthma
  publication-title: Thorax
– volume: 41
  start-page: 200
  year: 2020
  end-page: 212
  ident: bib119
  article-title: T Cell Co-stimulation and Functional Modulation by Innate Signals
  publication-title: Trends Immunol.
– volume: 12
  start-page: 1041
  year: 2019
  end-page: 1055
  ident: bib291
  article-title: FGF10-FGFR2B Signaling Generates Basal Cells and Drives Alveolar Epithelial Regeneration by Bronchial Epithelial Stem Cells after Lung Injury
  publication-title: Stem Cell Reports
– volume: 63
  start-page: 61
  year: 2020
  end-page: 67
  ident: bib294
  article-title: CD4
  publication-title: Curr. Opin. Immunol.
– volume: 21
  start-page: 1181
  year: 2020
  end-page: 1193
  ident: bib120
  article-title: Basophils prime group 2 innate lymphoid cells for neuropeptide-mediated inhibition
  publication-title: Nat. Immunol.
– volume: 348
  start-page: aaa6566
  year: 2015
  ident: bib68
  article-title: Innate lymphoid cells. Innate lymphoid cells: a new paradigm in immunology
  publication-title: Science
– volume: 10
  start-page: 60
  year: 1996
  end-page: 69
  ident: bib137
  article-title: The T/ebp null mouse: thyroid-specific enhancer-binding protein is essential for the organogenesis of the thyroid, lung, ventral forebrain, and pituitary
  publication-title: Genes Dev.
– volume: 3
  start-page: eaat9453
  year: 2018
  ident: bib12
  article-title: The cysteinyl leukotriene 3 receptor regulates expansion of IL-25-producing airway brush cells leading to type 2 inflammation
  publication-title: Sci. Immunol.
– volume: 298
  start-page: L210
  year: 2010
  end-page: L231
  ident: bib145
  article-title: Mechanisms of Ca2+-stimulated fluid secretion by porcine bronchial submucosal gland serous acinar cells
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 19
  start-page: 217
  year: 2016
  end-page: 231
  ident: bib170
  article-title: Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells
  publication-title: Cell Stem Cell
– volume: 57
  start-page: 66
  year: 2017
  end-page: 76
  ident: bib86
  article-title: Three unique interstitial macrophages in the murine lung at steady state
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 131
  start-page: 933
  year: 2013
  end-page: 957, quiz 958
  ident: bib130
  article-title: B-lymphocyte lineage cells and the respiratory system
  publication-title: J. Allergy Clin. Immunol.
– volume: 121
  start-page: 2984
  year: 2011
  end-page: 2992
  ident: bib16
  article-title: Genes regulating lymphangiogenesis control venous valve formation and maintenance in mice
  publication-title: J. Clin. Invest.
– volume: 46
  start-page: 450
  year: 2010
  end-page: 456
  ident: bib76
  article-title: Cultures of human tracheal gland cells of mucous or serous phenotype
  publication-title: In Vitro Cell. Dev. Biol. Anim.
– volume: 201
  start-page: 1209
  year: 2020
  end-page: 1217
  ident: bib116
  article-title: Localization of Macrophages in the Human Lung via Design-based Stereology
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 282
  start-page: 114
  year: 2018
  end-page: 120
  ident: bib126
  article-title: Biomarkers for evaluation of mast cell and basophil activation
  publication-title: Immunol. Rev.
– volume: 52
  start-page: 617
  year: 2020
  end-page: 630.e6
  ident: bib261
  article-title: Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung
  publication-title: Dev. Cell
– volume: 106
  start-page: 9286
  year: 2009
  end-page: 9291
  ident: bib85
  article-title: Stem cells are dispensable for lung homeostasis but restore airways after injury
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 566
  start-page: 496
  year: 2019
  end-page: 502
  ident: bib31
  article-title: The single-cell transcriptional landscape of mammalian organogenesis
  publication-title: Nature
– volume: 27
  start-page: 806
  year: 2021
  end-page: 814
  ident: bib33
  article-title: Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition
  publication-title: Nat. Med.
– volume: 122
  start-page: 1693
  year: 1996
  end-page: 1702
  ident: bib17
  article-title: Evidence from normal expression and targeted misexpression that bone morphogenetic protein (Bmp-4) plays a role in mouse embryonic lung morphogenesis
  publication-title: Development
– volume: 195
  start-page: 3978
  year: 2015
  end-page: 3991
  ident: bib239
  article-title: Fibrocytes Regulate Wilms Tumor 1-Positive Cell Accumulation in Severe Fibrotic Lung Disease
  publication-title: J. Immunol.
– volume: 94
  start-page: 107485
  year: 2021
  ident: bib274
  article-title: Title of article: Mucosal-associated invariant T cells in lung diseases
  publication-title: Int. Immunopharmacol.
– volume: 24
  start-page: 671
  year: 2001
  end-page: 681
  ident: bib112
  article-title: Clara cell secretory protein-expressing cells of the airway neuroepithelial body microenvironment include a label-retaining subset and are critical for epithelial renewal after progenitor cell depletion
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 164
  start-page: 577
  year: 2004
  end-page: 588
  ident: bib113
  article-title: Basal cells are a multipotent progenitor capable of renewing the bronchial epithelium
  publication-title: Am. J. Pathol.
– volume: 316
  start-page: L1141
  year: 2019
  end-page: L1149
  ident: bib202
  article-title: Development of solitary chemosensory cells in the distal lung after severe influenza injury
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 16
  start-page: 129
  year: 2008
  end-page: 130
  ident: bib300
  article-title: Tamoxifen-inducible Cre-recombination in articular chondrocytes of adult Col2a1-CreER(T2) transgenic mice
  publication-title: Osteoarthritis Cartilage
– volume: 109
  start-page: 12592
  year: 2012
  end-page: 12597
  ident: bib95
  article-title: Neuroepithelial body microenvironment is a niche for a distinct subset of Clara-like precursors in the developing airways
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 188
  start-page: 820
  year: 2013
  end-page: 830
  ident: bib117
  article-title: Role of lung pericytes and resident fibroblasts in the pathogenesis of pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 52
  start-page: 528
  year: 2020
  end-page: 541.e7
  ident: bib160
  article-title: Tuft-Cell-Derived Leukotrienes Drive Rapid Anti-helminth Immunity in the Small Intestine but Are Dispensable for Anti-protist Immunity
  publication-title: Immunity
– volume: 22
  start-page: 668
  year: 2018
  end-page: 683
  ident: bib251
  article-title: Myoepithelial Cells of Submucosal Glands Can Function as Reserve Stem Cells to Regenerate Airways after Injury
  publication-title: Cell Stem Cell
– volume: 170
  start-page: 1134
  year: 2017
  end-page: 1148
  ident: bib296
  article-title: Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung
  publication-title: Cell
– volume: 108
  start-page: E1475
  year: 2011
  end-page: E1483
  ident: bib218
  article-title: Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 120
  start-page: 2340
  year: 2012
  end-page: 2348
  ident: bib284
  article-title: Lymphatic endothelial progenitors bud from the cardinal vein and intersomitic vessels in mammalian embryos
  publication-title: Blood
– volume: 39
  start-page: 599
  year: 2013
  end-page: 610
  ident: bib125
  article-title: Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes
  publication-title: Immunity
– volume: 190
  start-page: 1763
  year: 2020
  end-page: 1773
  ident: bib212
  article-title: Rare Pulmonary Connective Tissue Type Mast Cells Regulate Lung Endothelial Cell Angiogenesis
  publication-title: Am. J. Pathol.
– volume: 41
  start-page: 1479
  year: 1993
  end-page: 1485
  ident: bib8
  article-title: Expression of human mucin genes in respiratory, digestive, and reproductive tracts ascertained by in situ hybridization
  publication-title: J. Histochem. Cytochem.
– volume: 363
  start-page: eaau0964
  year: 2019
  ident: bib37
  article-title: Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches
  publication-title: Science
– volume: 44
  start-page: 439
  year: 2016
  end-page: 449
  ident: bib88
  article-title: Tissue-resident macrophage ontogeny and homeostasis
  publication-title: Immunity
– volume: 136
  start-page: 3741
  year: 2009
  end-page: 3745
  ident: bib207
  article-title: The Id2+ distal tip lung epithelium contains individual multipotent embryonic progenitor cells
  publication-title: Development
– volume: 34
  start-page: 1017
  year: 2020
  end-page: 1032
  ident: bib75
  article-title: Cells of origin of lung cancers: lessons from mouse studies
  publication-title: Genes Dev.
– volume: 153
  start-page: 362
  year: 2013
  end-page: 375
  ident: bib32
  article-title: Nr4a1-dependent Ly6C(low) monocytes monitor endothelial cells and orchestrate their disposal
  publication-title: Cell
– volume: 105
  start-page: 16626
  year: 2008
  end-page: 16630
  ident: bib201
  article-title: Mesothelium contributes to vascular smooth muscle and mesenchyme during lung development
  publication-title: Proc. Natl. Acad. Sci. USA
– start-page: 326
  year: 2016
  end-page: 333
  ident: bib235
  article-title: Basophils—Role in Immunity
  publication-title: Encyclopedia of Immunobiology
– volume: 9
  start-page: 113
  year: 2018
  ident: bib220
  article-title: Neutrophil: A Cell with Many Roles in Inflammation or Several Cell Types?
  publication-title: Front. Physiol.
– volume: 49
  start-page: 503
  year: 2013
  end-page: 510
  ident: bib165
  article-title: Flow cytometric analysis of macrophages and dendritic cell subsets in the mouse lung
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 44
  start-page: 752
  year: 2018
  end-page: 761.e4
  ident: bib285
  article-title: Spatial-Temporal Lineage Restrictions of Embryonic p63
  publication-title: Dev. Cell
– volume: 233
  start-page: 1378
  year: 2005
  end-page: 1385
  ident: bib205
  article-title: Intercellular growth factor signaling and the development of mouse tracheal submucosal glands
  publication-title: Dev. Dyn.
– volume: 107
  start-page: 281
  year: 1970
  end-page: 299
  ident: bib162
  article-title: Ultrastructure of cells in the human bronchial submucosal glands
  publication-title: J. Anat.
– volume: 159
  start-page: 245
  year: 2020
  end-page: 256
  ident: bib5
  article-title: Tissue-resident innate immunity in the lung
  publication-title: Immunology
– volume: 24
  start-page: 729
  year: 1969
  end-page: 736
  ident: bib163
  article-title: A reconstruction of the duct system and secretory tubules of the human bronchial submucosal gland
  publication-title: Thorax
– volume: 65
  start-page: 32
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib93
  article-title: Increased myoepithelial cells of bronchial submucosal glands in fatal asthma
  publication-title: Thorax
  doi: 10.1136/thx.2008.111435
– volume: 10
  start-page: 453
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib177
  article-title: Venous identity requires BMP signalling through ALK3
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-08315-w
– volume: 127
  start-page: 3866
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib271
  article-title: Expression of Piwi protein MIWI2 defines a distinct population of multiciliated cells
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI94639
– volume: 189
  start-page: 301
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib42
  article-title: Foxa3 induces goblet cell metaplasia and inhibits innate antiviral immunity
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201306-1181OC
– volume: 146
  start-page: dev170571
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib84
  article-title: Hematopoietic stem cell-independent hematopoiesis and the origins of innate-like B lymphocytes
  publication-title: Development
  doi: 10.1242/dev.170571
– year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib102
  article-title: Integrated analysis of multimodal single-cell data
  publication-title: bioRxiv
– volume: 28
  start-page: 1775
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib197
  article-title: Age-dependent alveolar epithelial plasticity orchestrates lung homeostasis and regeneration
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2021.04.026
– volume: 12
  start-page: 1041
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib291
  article-title: FGF10-FGFR2B Signaling Generates Basal Cells and Drives Alveolar Epithelial Regeneration by Bronchial Epithelial Stem Cells after Lung Injury
  publication-title: Stem Cell Reports
  doi: 10.1016/j.stemcr.2019.04.003
– volume: 19
  start-page: 711
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib219
  article-title: Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-018-0136-9
– volume: 130
  start-page: 5088
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib132
  article-title: Contributions of alveolar epithelial cell quality control to pulmonary fibrosis
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI139519
– volume: 560
  start-page: 319
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib169
  article-title: A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
  publication-title: Nature
  doi: 10.1038/s41586-018-0393-7
– volume: 163
  start-page: 394
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib141
  article-title: Formation of a Neurosensory Organ by Epithelial Cell Slithering
  publication-title: Cell
  doi: 10.1016/j.cell.2015.09.021
– volume: 199
  start-page: 715
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib186
  article-title: Localization of Secretory Mucins MUC5AC and MUC5B in Normal/Healthy Human Airways
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201804-0734OC
– volume: 327
  start-page: 1385
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib236
  article-title: Lgr6 marks stem cells in the hair follicle that generate all cell lineages of the skin
  publication-title: Science
  doi: 10.1126/science.1184733
– volume: 351
  start-page: 707
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib26
  article-title: Pulmonary neuroendocrine cells function as airway sensors to control lung immune response
  publication-title: Science
  doi: 10.1126/science.aad7969
– volume: 38
  start-page: 535
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib283
  article-title: Basophils and mast cells in immunity and inflammation
  publication-title: Semin. Immunopathol.
  doi: 10.1007/s00281-016-0582-0
– volume: 11
  start-page: 111
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib298
  article-title: Spatial-temporal targeting of lung-specific mesenchyme by a Tbx4 enhancer
  publication-title: BMC Biol.
  doi: 10.1186/1741-7007-11-111
– volume: 124
  start-page: 1283
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib276
  article-title: Long-lived intestinal tuft cells serve as colon cancer-initiating cells
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI73434
– volume: 210
  start-page: 1977
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib96
  article-title: Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20131199
– volume: 4
  start-page: 525
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib208
  article-title: The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2009.04.002
– volume: 3
  start-page: eaat9453
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib12
  article-title: The cysteinyl leukotriene 3 receptor regulates expansion of IL-25-producing airway brush cells leading to type 2 inflammation
  publication-title: Sci. Immunol.
  doi: 10.1126/sciimmunol.aat9453
– volume: 26
  start-page: 346
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib129
  article-title: Distinct airway epithelial stem cells hide among club cells but mobilize to promote alveolar regeneration
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2019.12.014
– volume: 340
  start-page: 215
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib252
  article-title: On the evolution of the pulmonary alveolar lipofibroblast
  publication-title: Exp. Cell Res.
  doi: 10.1016/j.yexcr.2015.12.004
– volume: 204
  start-page: 1653
  year: 2007
  ident: 10.1016/j.devcel.2021.11.007_bib35
  article-title: Notch-RBP-J signaling controls the homeostasis of CD8- dendritic cells in the spleen
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20062648
– volume: 94
  start-page: 107485
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib274
  article-title: Title of article: Mucosal-associated invariant T cells in lung diseases
  publication-title: Int. Immunopharmacol.
  doi: 10.1016/j.intimp.2021.107485
– volume: 10
  start-page: 2458
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib224
  article-title: Challenges and Opportunities for Consistent Classification of Human B Cell and Plasma Cell Populations
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2019.02458
– volume: 34
  start-page: 2372
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib52
  article-title: Signaling pathways in the specification of arteries and veins
  publication-title: Arterioscler. Thromb. Vasc. Biol.
  doi: 10.1161/ATVBAHA.114.303218
– volume: 43
  start-page: 173
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib77
  article-title: Directed expression of Cre in alveolar epithelial type 1 cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2009-0226OC
– volume: 169
  start-page: 120
  year: 2004
  ident: 10.1016/j.devcel.2021.11.007_bib183
  article-title: The number of alveoli in the human lung
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.200308-1107OC
– volume: 7
  start-page: e36865
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib150
  article-title: Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
  publication-title: eLife
  doi: 10.7554/eLife.36865
– volume: 13
  start-page: 2679
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib180
  article-title: Directed Migration of Pulmonary Neuroendocrine Cells toward Airway Branches Organizes the Stereotypic Location of Neuroepithelial Bodies
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2015.11.058
– volume: 9
  start-page: 1777
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib2
  article-title: Alveolar macrophages in the resolution of inflammation, tissue repair, and tolerance to infection
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.01777
– volume: 2
  start-page: 240
  year: 1992
  ident: 10.1016/j.devcel.2021.11.007_bib73
  article-title: Submucosal glands are the predominant site of CFTR expression in the human bronchus
  publication-title: Nat. Genet.
  doi: 10.1038/ng1192-240
– volume: 105
  start-page: 16626
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib201
  article-title: Mesothelium contributes to vascular smooth muscle and mesenchyme during lung development
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0808649105
– volume: 212
  start-page: 482
  year: 1998
  ident: 10.1016/j.devcel.2021.11.007_bib231
  article-title: Mesenchyme specifies epithelial differentiation in reciprocal recombinants of embryonic lung and trachea
  publication-title: Dev. Dyn.
  doi: 10.1002/(SICI)1097-0177(199808)212:4<482::AID-AJA2>3.0.CO;2-D
– volume: 144
  start-page: 755
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib250
  article-title: Plasticity in the lung: making and breaking cell identity
  publication-title: Development
  doi: 10.1242/dev.143784
– volume: 16
  start-page: 18
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib44
  article-title: Antiviral B cell and T cell immunity in the lungs
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3056
– volume: 116
  start-page: 4362
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib79
  article-title: Early lineage specification defines alveolar epithelial ontogeny in the murine lung
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1813952116
– volume: 41
  start-page: 1479
  year: 1993
  ident: 10.1016/j.devcel.2021.11.007_bib8
  article-title: Expression of human mucin genes in respiratory, digestive, and reproductive tracts ascertained by in situ hybridization
  publication-title: J. Histochem. Cytochem.
  doi: 10.1177/41.10.8245407
– volume: 22
  start-page: 653
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib154
  article-title: Submucosal Gland Myoepithelial Cells Are Reserve Stem Cells That Can Regenerate Mouse Tracheal Epithelium
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.03.017
– volume: 139
  start-page: 375
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib273
  article-title: What makes a good lung?
  publication-title: Swiss Med. Wkly.
– volume: 120
  start-page: 2340
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib284
  article-title: Lymphatic endothelial progenitors bud from the cardinal vein and intersomitic vessels in mammalian embryos
  publication-title: Blood
  doi: 10.1182/blood-2012-05-428607
– volume: 125
  start-page: 4977
  year: 1998
  ident: 10.1016/j.devcel.2021.11.007_bib176
  article-title: Repression of hedgehog signaling and BMP4 expression in growth plate cartilage by fibroblast growth factor receptor 3
  publication-title: Development
  doi: 10.1242/dev.125.24.4977
– volume: 22
  start-page: 668
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib251
  article-title: Myoepithelial Cells of Submucosal Glands Can Function as Reserve Stem Cells to Regenerate Airways after Injury
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.03.018
– volume: 50
  start-page: 707
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib55
  article-title: Adventitial stromal cells define group 2 innate lymphoid cell tissue niches
  publication-title: Immunity
  doi: 10.1016/j.immuni.2019.02.002
– volume: 62
  start-page: 1375
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib108
  article-title: Crouzon syndrome mouse model exhibits cartilage hyperproliferation and defective segmentation in the developing trachea
  publication-title: Sci. China Life Sci.
  doi: 10.1007/s11427-019-9568-x
– volume: 56
  start-page: 716
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib4
  article-title: Multipotent myoepithelial progenitor cells are born early during airway submucosal gland development
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2016-0304OC
– volume: 2018
  start-page: 5160794
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib229
  article-title: Lung Interstitial Macrophages: Past, Present, and Future
  publication-title: J. Immunol. Res.
– volume: 63
  start-page: 61
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib294
  article-title: CD4+ teff cell heterogeneity: the perspective from single-cell transcriptomics
  publication-title: Curr. Opin. Immunol.
  doi: 10.1016/j.coi.2020.02.004
– volume: 356
  start-page: 541
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib91
  article-title: Wnt2 signaling is necessary and sufficient to activate the airway smooth muscle program in the lung by regulating myocardin/Mrtf-B and Fgf10 expression
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2011.06.011
– volume: 6
  start-page: eaba1972
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib98
  article-title: Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
  publication-title: Sci. Adv.
  doi: 10.1126/sciadv.aba1972
– volume: 50
  start-page: 1425
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib227
  article-title: Tissue-Resident Group 2 Innate Lymphoid Cells Differentiate by Layered Ontogeny and In Situ Perinatal Priming
  publication-title: Immunity
  doi: 10.1016/j.immuni.2019.04.019
– volume: 11
  start-page: 2103
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib156
  article-title: Is There a Role for Basophils in Cancer?
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2020.02103
– volume: 49
  start-page: 503
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib165
  article-title: Flow cytometric analysis of macrophages and dendritic cell subsets in the mouse lung
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2013-0086MA
– volume: 295
  start-page: L231
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib206
  article-title: Ciliated epithelial cell lifespan in the mouse trachea and lung
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.90209.2008
– volume: 46
  start-page: 457
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib221
  article-title: Exposure to Bacterial CpG DNA Protects from Airway Allergic Inflammation by Expanding Regulatory Lung Interstitial Macrophages
  publication-title: Immunity
  doi: 10.1016/j.immuni.2017.02.016
– volume: 25
  start-page: 1317
  year: 1997
  ident: 10.1016/j.devcel.2021.11.007_bib215
  article-title: B lymphocyte-specific, Cre-mediated mutagenesis in mice
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/25.6.1317
– volume: 164
  start-page: 577
  year: 2004
  ident: 10.1016/j.devcel.2021.11.007_bib113
  article-title: Basal cells are a multipotent progenitor capable of renewing the bronchial epithelium
  publication-title: Am. J. Pathol.
  doi: 10.1016/S0002-9440(10)63147-1
– volume: 57
  start-page: 272
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib246
  article-title: Lymphatic Changes in Respiratory Diseases: More than Just Remodeling of the Lung?
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2016-0290TR
– volume: 517
  start-page: 293
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib7
  article-title: The biology of innate lymphoid cells
  publication-title: Nature
  doi: 10.1038/nature14189
– volume: 124
  start-page: 4867
  year: 1997
  ident: 10.1016/j.devcel.2021.11.007_bib19
  article-title: Fibroblast growth factor 10 (FGF10) and branching morphogenesis in the embryonic mouse lung
  publication-title: Development
  doi: 10.1242/dev.124.23.4867
– volume: 286
  start-page: L650
  year: 2004
  ident: 10.1016/j.devcel.2021.11.007_bib288
  article-title: Role of f-box factor foxj1 in differentiation of ciliated airway epithelial cells
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00170.2003
– volume: 350
  start-page: 981
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib81
  article-title: Tissue residency of innate lymphoid cells in lymphoid and nonlymphoid organs
  publication-title: Science
  doi: 10.1126/science.aac9593
– volume: 560
  start-page: 377
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib198
  article-title: A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
  publication-title: Nature
  doi: 10.1038/s41586-018-0394-6
– volume: 33
  start-page: 282
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib3
  article-title: Resident memory B cells
  publication-title: Viral Immunol.
  doi: 10.1089/vim.2019.0141
– volume: 109
  start-page: 859
  year: 2007
  ident: 10.1016/j.devcel.2021.11.007_bib146
  article-title: When is a mouse basophil not a basophil?
  publication-title: Blood
  doi: 10.1182/blood-2006-06-027490
– volume: 454
  start-page: 109
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib299
  article-title: Epicardial progenitors contribute to the cardiomyocyte lineage in the developing heart
  publication-title: Nature
  doi: 10.1038/nature07060
– volume: 144
  start-page: 2323
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib123
  article-title: Human haematopoietic stem cell development: from the embryo to the dish
  publication-title: Development
  doi: 10.1242/dev.134866
– volume: 15
  start-page: 123
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib110
  article-title: Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2014.07.012
– volume: 316
  start-page: L872
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib192
  article-title: The Tcf21 lineage constitutes the lung lipofibroblast population
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00254.2018
– volume: 119
  start-page: 2914
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib39
  article-title: SPDEF is required for mouse pulmonary goblet cell differentiation and regulates a network of genes associated with mucus production
  publication-title: J. Clin. Invest.
– volume: 109
  start-page: 12592
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib95
  article-title: Neuroepithelial body microenvironment is a niche for a distinct subset of Clara-like precursors in the developing airways
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1204710109
– volume: 136
  start-page: 3741
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib207
  article-title: The Id2+ distal tip lung epithelium contains individual multipotent embryonic progenitor cells
  publication-title: Development
  doi: 10.1242/dev.037317
– volume: 30
  start-page: 647
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib241
  article-title: Innate lymphoid cells: emerging insights in development, lineage relationships, and function
  publication-title: Annu. Rev. Immunol.
  doi: 10.1146/annurev-immunol-020711-075053
– volume: 51
  start-page: 766
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib152
  article-title: Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-019-0388-9
– volume: 110
  start-page: 19444
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib107
  article-title: Establishment of smooth muscle and cartilage juxtaposition in the developing mouse upper airways
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1313223110
– volume: 170
  start-page: 1134
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib296
  article-title: Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung
  publication-title: Cell
  doi: 10.1016/j.cell.2017.07.034
– volume: 122
  start-page: 1693
  year: 1996
  ident: 10.1016/j.devcel.2021.11.007_bib17
  article-title: Evidence from normal expression and targeted misexpression that bone morphogenetic protein (Bmp-4) plays a role in mouse embryonic lung morphogenesis
  publication-title: Development
  doi: 10.1242/dev.122.6.1693
– volume: 131
  start-page: 933
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib130
  article-title: B-lymphocyte lineage cells and the respiratory system
  publication-title: J. Allergy Clin. Immunol.
  doi: 10.1016/j.jaci.2013.02.023
– volume: 27
  start-page: 181
  year: 1972
  ident: 10.1016/j.devcel.2021.11.007_bib157
  article-title: Oncocytes in human bronchial mucous glands
  publication-title: Thorax
  doi: 10.1136/thx.27.2.181
– volume: 38
  start-page: 970
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib226
  article-title: IRF4 transcription factor-dependent CD11b+ dendritic cells in human and mouse control mucosal IL-17 cytokine responses
  publication-title: Immunity
  doi: 10.1016/j.immuni.2013.04.011
– volume: 41
  start-page: 200
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib119
  article-title: T Cell Co-stimulation and Functional Modulation by Innate Signals
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2020.01.003
– volume: 20
  start-page: 1181
  year: 1999
  ident: 10.1016/j.devcel.2021.11.007_bib23
  article-title: Murine submucosal glands are clonally derived and show a cystic fibrosis gene-dependent distribution pattern
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/ajrcmb.20.6.3475
– volume: 9
  start-page: 9
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib179
  article-title: Defining the role of pulmonary endothelial cell heterogeneity in the response to acute lung injury
  publication-title: eLife
  doi: 10.7554/eLife.53072
– volume: 47
  start-page: 476
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib151
  article-title: Generation of a mouse line expressing Sox17-driven Cre recombinase with specific activity in arteries
  publication-title: Genesis
  doi: 10.1002/dvg.20520
– volume: 128
  start-page: 4008
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib182
  article-title: Expression of mutant Sftpc in murine alveolar epithelia drives spontaneous lung fibrosis
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI99287
– volume: 22
  start-page: 639
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib66
  article-title: Blood development: hematopoietic stem cell dependence and independence
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.04.015
– volume: 153
  start-page: 362
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib32
  article-title: Nr4a1-dependent Ly6C(low) monocytes monitor endothelial cells and orchestrate their disposal
  publication-title: Cell
  doi: 10.1016/j.cell.2013.03.010
– volume: 58
  start-page: 377
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib140
  article-title: The Role of Mast Cells in IgE-Independent Lung Diseases
  publication-title: Clin. Rev. Allergy Immunol.
  doi: 10.1007/s12016-020-08779-5
– volume: 142
  start-page: 542
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib36
  article-title: Plasmacytoid dendritic cells drive acute asthma exacerbations
  publication-title: J. Allergy Clin. Immunol.
  doi: 10.1016/j.jaci.2017.08.032
– volume: 10
  start-page: 1222
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib172
  article-title: What Makes a pDC: Recent Advances in Understanding Plasmacytoid DC Development and Heterogeneity
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2019.01222
– volume: 99
  start-page: 513
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib277
  article-title: Building and Regenerating the Lung Cell by Cell
  publication-title: Physiol. Rev.
  doi: 10.1152/physrev.00001.2018
– volume: 59
  start-page: 10
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib47
  article-title: Pulmonary smooth muscle in vertebrates: a comparative review of structure and function
  publication-title: Integr. Comp. Biol.
  doi: 10.1093/icb/icz002
– volume: 368
  start-page: 600
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib193
  article-title: Prenatal development of human immunity
  publication-title: Science
  doi: 10.1126/science.aaz9330
– volume: 127
  start-page: 620
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib101
  article-title: ICAM-2 facilitates luminal interactions between neutrophils and endothelial cells in vivo
  publication-title: J. Cell Sci.
– volume: 46
  start-page: 450
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib76
  article-title: Cultures of human tracheal gland cells of mucous or serous phenotype
  publication-title: In Vitro Cell. Dev. Biol. Anim.
  doi: 10.1007/s11626-009-9262-x
– volume: 42
  start-page: 665
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib109
  article-title: C-Myb(+) erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages
  publication-title: Immunity
  doi: 10.1016/j.immuni.2015.03.011
– volume: 209
  start-page: 60
  year: 1999
  ident: 10.1016/j.devcel.2021.11.007_bib164
  article-title: Defects in tracheoesophageal and lung morphogenesis in Nkx2.1(-/-) mouse embryos
  publication-title: Dev. Biol.
  doi: 10.1006/dbio.1999.9234
– volume: 23
  start-page: 482
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib94
  article-title: Radial construction of an arterial wall
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2012.07.009
– volume: 17
  start-page: 1101
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib106
  article-title: Repair and regeneration of tracheal surface epithelium and submucosal glands in a mouse model of hypoxic-ischemic injury
  publication-title: Respirology
  doi: 10.1111/j.1440-1843.2012.02204.x
– volume: 47
  start-page: 517
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib41
  article-title: Dynamic regulation of platelet-derived growth factor receptor α expression in alveolar fibroblasts during realveolarization
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2012-0030OC
– volume: 10
  start-page: 3130
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib244
  article-title: Mouse Models and Tools for the in vivo Study of Neutrophils
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2019.03130
– volume: 8
  start-page: 13455
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib142
  article-title: Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-018-31640-x
– volume: 133
  start-page: 1543
  year: 2006
  ident: 10.1016/j.devcel.2021.11.007_bib295
  article-title: Vascular wall resident progenitor cells: a source for postnatal vasculogenesis
  publication-title: Development
  doi: 10.1242/dev.02315
– volume: 24
  start-page: 662
  year: 2001
  ident: 10.1016/j.devcel.2021.11.007_bib24
  article-title: Evidence for stem-cell niches in the tracheal epithelium
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/ajrcmb.24.6.4217
– volume: 6
  start-page: e18472
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib136
  article-title: Ascl1 (Mash1) defines cells with long-term neurogenic potential in subgranular and subventricular zones in adult mouse brain
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0018472
– volume: 49
  start-page: 564
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib195
  article-title: T cells in severe childhood asthma
  publication-title: Clin. Exp. Allergy
  doi: 10.1111/cea.13374
– volume: 9
  start-page: 2448
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib131
  article-title: Pulmonary pericytes regulate lung morphogenesis
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-018-04913-2
– volume: 49
  start-page: 190
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib225
  article-title: Chemosensory brush cells of the trachea. A stable population in a dynamic epithelium
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2012-0485OC
– volume: 44
  start-page: 752
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib285
  article-title: Spatial-Temporal Lineage Restrictions of Embryonic p63+ Progenitors Establish Distinct Stem Cell Pools in Adult Airways
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2018.03.001
– volume: 142
  start-page: 1848
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib190
  article-title: Single-Cell RNA Sequencing Unveils Unique Transcriptomic Signatures of Organ-Specific Endothelial Cells
  publication-title: Circulation
  doi: 10.1161/CIRCULATIONAHA.119.041433
– volume: 13
  start-page: 145
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib242
  article-title: Innate lymphoid cells--a proposal for uniform nomenclature
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri3365
– volume: 70
  start-page: 11
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib280
  article-title: The role of CD8 + T lymphocytes in chronic obstructive pulmonary disease: a systematic review
  publication-title: Inflamm. Res.
  doi: 10.1007/s00011-020-01408-z
– volume: 22
  start-page: 1295
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib34
  article-title: Gli1+ mesenchymal stromal cells form a pathological niche to promote airway progenitor metaplasia in the fibrotic lung
  publication-title: Nat. Cell Biol.
  doi: 10.1038/s41556-020-00591-9
– volume: 316
  start-page: L1141
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib202
  article-title: Development of solitary chemosensory cells in the distal lung after severe influenza injury
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00032.2019
– volume: 348
  start-page: aaa6566
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib68
  article-title: Innate lymphoid cells. Innate lymphoid cells: a new paradigm in immunology
  publication-title: Science
  doi: 10.1126/science.aaa6566
– volume: 29
  start-page: 1283
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib104
  article-title: Novel stem/progenitor cell population from murine tracheal submucosal gland ducts with multipotent regenerative potential
  publication-title: Stem Cells
  doi: 10.1002/stem.680
– volume: 1
  start-page: e00043-16
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib175
  article-title: MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses
  publication-title: mSystems
  doi: 10.1128/mSystems.00043-16
– volume: 233
  start-page: 1378
  year: 2005
  ident: 10.1016/j.devcel.2021.11.007_bib205
  article-title: Intercellular growth factor signaling and the development of mouse tracheal submucosal glands
  publication-title: Dev. Dyn.
  doi: 10.1002/dvdy.20461
– volume: 6
  start-page: eaba1983
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib1
  article-title: Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
  publication-title: Sci. Adv.
  doi: 10.1126/sciadv.aba1983
– volume: 19
  start-page: 904
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib282
  article-title: Local lung hypoxia determines epithelial fate decisions during alveolar regeneration
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb3580
– volume: 479
  start-page: 189
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib259
  article-title: Distinct stem cells contribute to mammary gland development and maintenance
  publication-title: Nature
  doi: 10.1038/nature10573
– volume: 126
  start-page: 4005
  year: 1999
  ident: 10.1016/j.devcel.2021.11.007_bib272
  article-title: Bmp signaling regulates proximal-distal differentiation of endoderm in mouse lung development
  publication-title: Development
  doi: 10.1242/dev.126.18.4005
– volume: 5
  start-page: 64
  year: 2004
  ident: 10.1016/j.devcel.2021.11.007_bib67
  article-title: An essential function for the nuclear receptor RORgamma(t) in the generation of fetal lymphoid tissue inducer cells
  publication-title: Nat. Immunol.
  doi: 10.1038/ni1022
– volume: 360
  start-page: 1086
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib247
  article-title: Pulmonary neuroendocrine cells amplify allergic asthma responses
  publication-title: Science
  doi: 10.1126/science.aan8546
– volume: 500
  start-page: 589
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib196
  article-title: Coordination of heart and lung co-development by a multipotent cardiopulmonary progenitor
  publication-title: Nature
  doi: 10.1038/nature12358
– volume: 180
  start-page: 764
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib128
  article-title: Single-Cell Transcriptome Atlas of Murine Endothelial Cells
  publication-title: Cell
  doi: 10.1016/j.cell.2020.01.015
– volume: 34
  start-page: 2758
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib153
  article-title: Wnt Signaling Regulates Airway Epithelial Stem Cells in Adult Murine Submucosal Glands
  publication-title: Stem Cells
  doi: 10.1002/stem.2443
– volume: 315
  start-page: L576
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib11
  article-title: Dissociation, cellular isolation, and initial molecular characterization of neonatal and pediatric human lung tissues
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00041.2018
– volume: 29
  start-page: 65
  year: 1998
  ident: 10.1016/j.devcel.2021.11.007_bib184
  article-title: Destruction and loss of bronchial cartilage in cystic fibrosis
  publication-title: Hum. Pathol.
  doi: 10.1016/S0046-8177(98)90392-6
– volume: 52
  start-page: 528
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib160
  article-title: Tuft-Cell-Derived Leukotrienes Drive Rapid Anti-helminth Immunity in the Small Intestine but Are Dispensable for Anti-protist Immunity
  publication-title: Immunity
  doi: 10.1016/j.immuni.2020.02.005
– volume: 307
  start-page: L231
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib200
  article-title: Reduced platelet-derived growth factor receptor expression is a primary feature of human bronchopulmonary dysplasia
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00342.2013
– volume: 587
  start-page: 619
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib255
  article-title: A molecular cell atlas of the human lung from single-cell RNA sequencing
  publication-title: Nature
  doi: 10.1038/s41586-020-2922-4
– volume: 95
  start-page: 1241
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib279
  article-title: Airway Gland Structure and Function
  publication-title: Physiol. Rev.
  doi: 10.1152/physrev.00039.2014
– volume: 17
  start-page: 626
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib234
  article-title: Inflammatory triggers associated with exacerbations of COPD orchestrate plasticity of group 2 innate lymphoid cells in the lungs
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3443
– volume: 54
  start-page: 13
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib290
  article-title: Flow Cytometric Analysis of Myeloid Cells in Human Blood, Bronchoalveolar Lavage, and Lung Tissues
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2015-0146OC
– volume: 20
  start-page: 815
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib187
  article-title: PDGFRβ signaling regulates mural cell plasticity and inhibits fat development
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2011.04.019
– volume: 59
  start-page: 706
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib45
  article-title: Ager-CreERT2: a new genetic tool for studying lung alveolar development, homeostasis, and repair
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2018-0125OC
– volume: 41
  start-page: 601
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib269
  article-title: Transcriptional Control of Mature B Cell Fates
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2020.04.011
– volume: 38
  start-page: e102099
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib223
  article-title: Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo
  publication-title: EMBO J.
  doi: 10.15252/embj.2019102099
– volume: 318
  start-page: L684
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib21
  article-title: PDGFRα and αSMA mark two distinct mesenchymal cell populations involved in parenchymal and vascular remodeling in pulmonary fibrosis
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00128.2019
– volume: 54
  start-page: 222
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib264
  article-title: Contribution of Fetal, but Not Adult, Pulmonary Mesothelium to Mesenchymal Lineages in Lung Homeostasis and Fibrosis
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2014-0461OC
– volume: 56
  start-page: 1917
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib138
  article-title: Airway basal stem cells reutilize the embryonic proliferation regulator, Tgfbeta-Id2 axis, for tissue regeneration
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2021.05.016
– volume: 162
  start-page: 1025
  year: 1985
  ident: 10.1016/j.devcel.2021.11.007_bib174
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.162.3.1025
– volume: 3
  start-page: 545
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib217
  article-title: Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling
  publication-title: Dis. Model. Mech.
  doi: 10.1242/dmm.006031
– volume: 202
  start-page: 351
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib143
  article-title: The Multifaceted B Cell Response to Influenza Virus
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1801208
– volume: 124
  start-page: 1337
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib127
  article-title: The Transcription Factor ERG Regulates Super-Enhancers Associated With an Endothelial-Specific Gene Expression Program
  publication-title: Circ. Res.
  doi: 10.1161/CIRCRESAHA.118.313788
– volume: 409
  start-page: 429
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib25
  article-title: A three-dimensional study of alveologenesis in mouse lung
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2015.11.017
– volume: 507
  start-page: 190
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib60
  article-title: Alveolar progenitor and stem cells in lung development, renewal and cancer
  publication-title: Nature
  doi: 10.1038/nature12930
– volume: 10
  start-page: 1007
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib147
  article-title: The prostate basal cell (BC) heterogeneity and the p63-positive BC differentiation spectrum in mice
  publication-title: Int. J. Biol. Sci.
  doi: 10.7150/ijbs.9997
– volume: 24
  start-page: 729
  year: 1969
  ident: 10.1016/j.devcel.2021.11.007_bib163
  article-title: A reconstruction of the duct system and secretory tubules of the human bronchial submucosal gland
  publication-title: Thorax
  doi: 10.1136/thx.24.6.729
– volume: 435
  start-page: 98
  year: 2005
  ident: 10.1016/j.devcel.2021.11.007_bib289
  article-title: Suppression of Notch signalling by the COUP-TFII transcription factor regulates vein identity
  publication-title: Nature
  doi: 10.1038/nature03511
– volume: 359
  start-page: 114
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib115
  article-title: S1P-dependent interorgan trafficking of group 2 innate lymphoid cells supports host defense
  publication-title: Science
  doi: 10.1126/science.aam5809
– volume: 188
  start-page: 820
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib117
  article-title: Role of lung pericytes and resident fibroblasts in the pathogenesis of pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201212-2297OC
– volume: 529
  start-page: 221
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib265
  article-title: Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit
  publication-title: Nature
  doi: 10.1038/nature16161
– volume: 35
  start-page: 997
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib40
  article-title: Th17 cells mediate clade-specific, serotype-independent mucosal immunity
  publication-title: Immunity
  doi: 10.1016/j.immuni.2011.10.018
– volume: 12
  start-page: 1045
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib168
  article-title: Innate lymphoid cells promote lung-tissue homeostasis after infection with influenza virus
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.2131
– volume: 121
  start-page: 2984
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib16
  article-title: Genes regulating lymphangiogenesis control venous valve formation and maintenance in mice
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI58050
– volume: 143
  start-page: 1318
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib249
  article-title: Developmental origin of lung macrophage diversity
  publication-title: Development
– volume: 371
  start-page: eabc3172
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib297
  article-title: Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus
  publication-title: Science
  doi: 10.1126/science.abc3172
– volume: 286
  start-page: L631
  year: 2004
  ident: 10.1016/j.devcel.2021.11.007_bib228
  article-title: A subset of mouse tracheal epithelial basal cells generates large colonies in vitro
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00112.2003
– volume: 2015
  start-page: 983698
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib257
  article-title: Neutrophils in Cancer: Two Sides of the Same Coin
  publication-title: J. Immunol. Res.
– volume: 17
  start-page: 143
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib56
  article-title: Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling
  publication-title: Cell Commun. Signal.
  doi: 10.1186/s12964-019-0449-9
– volume: 21
  start-page: 1181
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib120
  article-title: Basophils prime group 2 innate lymphoid cells for neuropeptide-mediated inhibition
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-020-0753-y
– volume: 23
  start-page: 101724
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib262
  article-title: Mass Cytometry Phenotyping of Human Granulocytes Reveals Novel Basophil Functional Heterogeneity
  publication-title: iScience
  doi: 10.1016/j.isci.2020.101724
– volume: 1122
  start-page: 41
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib118
  article-title: Pericytes in the Lung
  publication-title: Adv. Exp. Med. Biol.
  doi: 10.1007/978-3-030-11093-2_3
– volume: 200
  start-page: 1164
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib211
  article-title: Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT+ Endothelial Progenitor Cells
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201812-2312OC
– volume: 204
  start-page: 326
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib270
  article-title: Generation of Pulmonary Endothelial Progenitor Cells for Cell-based Therapy Using Interspecies Mouse-Rat Chimeras
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.202003-0758OC
– volume: 175
  start-page: 1031
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib50
  article-title: Lung single-cell signaling interaction map reveals basophil role in macrophage imprinting
  publication-title: Cell
  doi: 10.1016/j.cell.2018.09.009
– volume: 21
  start-page: 120
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib144
  article-title: Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2017.03.024
– volume: 123
  start-page: 3025
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib13
  article-title: Type 2 alveolar cells are stem cells in adult lung
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI68782
– volume: 309
  start-page: L942
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib181
  article-title: Characterization of the platelet-derived growth factor receptor-α-positive cell lineage during murine late lung development
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00272.2014
– volume: 16
  start-page: 1
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib69
  article-title: The brave new world of innate lymphoid cells
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3059
– volume: 555
  start-page: 251
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib293
  article-title: Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor
  publication-title: Nature
  doi: 10.1038/nature25786
– volume: 129
  start-page: 191
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib14
  article-title: Innate IL-13-producing nuocytes arise during allergic lung inflammation and contribute to airways hyperreactivity
  publication-title: J. Allergy Clin. Immunol.
  doi: 10.1016/j.jaci.2011.09.041
– volume: 179
  start-page: 403
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib189
  article-title: Rare Pulmonary Neuroendocrine Cells Are Stem Cells Regulated by Rb, p53, and Notch
  publication-title: Cell
  doi: 10.1016/j.cell.2019.09.010
– volume: 19
  start-page: 217
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib170
  article-title: Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2016.05.012
– volume: 21
  start-page: 221
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib222
  article-title: Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-019-0582-z
– volume: 33
  start-page: 736
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib266
  article-title: Regulated expression of nuclear receptor RORγt confers distinct functional fates to NK cell receptor-expressing RORγt(+) innate lymphocytes
  publication-title: Immunity
  doi: 10.1016/j.immuni.2010.10.017
– volume: 18
  start-page: 2674
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib57
  article-title: Mast cells interact with endothelial cells to accelerate in vitro angiogenesis
  publication-title: Int. J. Mol. Sci.
  doi: 10.3390/ijms18122674
– volume: 115
  start-page: 2407
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib267
  article-title: Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1719474115
– volume: 9
  start-page: e62522
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib268
  article-title: Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
  publication-title: eLife
  doi: 10.7554/eLife.62522
– volume: 300
  start-page: L370
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib134
  article-title: Properties of substance P-stimulated mucus secretion from porcine tracheal submucosal glands
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00372.2010
– volume: 190
  start-page: 1763
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib212
  article-title: Rare Pulmonary Connective Tissue Type Mast Cells Regulate Lung Endothelial Cell Angiogenesis
  publication-title: Am. J. Pathol.
  doi: 10.1016/j.ajpath.2020.04.017
– year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib97
  article-title: Single-cell RNA-sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
  publication-title: bioRxiv
– volume: 32
  start-page: 869
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib30
  article-title: myeloid cell-derived reactive oxygen species induce epithelial mutagenesis
  publication-title: Cancer Cell
  doi: 10.1016/j.ccell.2017.11.004
– volume: 20
  start-page: 571
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib71
  article-title: Two-way conversion between lipogenic and myogenic fibroblastic phenotypes marks the progression and resolution of lung fibrosis
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2017.03.011
– volume: 9
  start-page: ra40
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib29
  article-title: FOXF1 maintains endothelial barrier function and prevents edema after lung injury
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.aad1899
– volume: 7
  start-page: 308ra159
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib232
  article-title: Smooth muscle cell progenitors are primed to muscularize in pulmonary hypertension
  publication-title: Sci. Transl. Med.
  doi: 10.1126/scitranslmed.aaa9712
– volume: 363
  start-page: eaau0964
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib37
  article-title: Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches
  publication-title: Science
  doi: 10.1126/science.aau0964
– volume: 586
  start-page: 785
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib87
  article-title: Capillary cell-type specialization in the alveolus
  publication-title: Nature
  doi: 10.1038/s41586-020-2822-7
– volume: 57
  start-page: 66
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib86
  article-title: Three unique interstitial macrophages in the murine lung at steady state
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2016-0361OC
– volume: 52
  start-page: 275
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib185
  article-title: Insulin-like Growth Factor 1 Supports a Pulmonary Niche that Promotes Type 3 Innate Lymphoid Cell Development in Newborn Lungs
  publication-title: Immunity
  doi: 10.1016/j.immuni.2020.01.005
– volume: 43
  start-page: 48
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib263
  article-title: Fgf10-Hippo Epithelial-Mesenchymal Crosstalk Maintains and Recruits Lung Basal Stem Cells
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2017.09.003
– volume: 517
  start-page: 616
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib301
  article-title: p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration
  publication-title: Nature
  doi: 10.1038/nature13903
– volume: 20
  start-page: 655
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib53
  article-title: PDGFRβ-P2A-CreERT2 mice: a genetic tool to target pericytes in angiogenesis
  publication-title: Angiogenesis
  doi: 10.1007/s10456-017-9570-9
– volume: 425
  start-page: 161
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib72
  article-title: Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2017.03.020
– volume: 6
  start-page: 6727
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib124
  article-title: Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms7727
– volume: 7
  start-page: 817
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib209
  article-title: Rare SOX2+ Airway Progenitor Cells Generate KRT5+ Cells that Repopulate Damaged Alveolar Parenchyma following Influenza Virus Infection
  publication-title: Stem Cell Reports
  doi: 10.1016/j.stemcr.2016.09.010
– volume: 199
  start-page: 1517
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib213
  article-title: Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201712-2410OC
– volume: 24
  start-page: 671
  year: 2001
  ident: 10.1016/j.devcel.2021.11.007_bib112
  article-title: Clara cell secretory protein-expressing cells of the airway neuroepithelial body microenvironment include a label-retaining subset and are critical for epithelial renewal after progenitor cell depletion
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/ajrcmb.24.6.4498
– volume: 9
  start-page: 174
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib27
  article-title: Multiple levels of immunological memory and their association with vaccination
  publication-title: Vaccines (Basel)
  doi: 10.3390/vaccines9020174
– volume: 1
  start-page: 442
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib83
  article-title: Division of labor between dendritic cell subsets of the lung
  publication-title: Mucosal Immunol.
  doi: 10.1038/mi.2008.39
– volume: 31
  start-page: 554
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib158
  article-title: Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
  publication-title: Cell Res.
  doi: 10.1038/s41422-020-00445-x
– volume: 166
  start-page: 600
  year: 1994
  ident: 10.1016/j.devcel.2021.11.007_bib230
  article-title: Induction of alveolar type II cell differentiation in fetal tracheal epithelium by grafted distal lung mesenchyme
  publication-title: Dev. Biol.
  doi: 10.1006/dbio.1994.1340
– volume: 179
  start-page: 603
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib260
  article-title: Spatiotemporal and functional behavior of airway dendritic cells visualized by two-photon microscopy
  publication-title: Am. J. Pathol.
  doi: 10.1016/j.ajpath.2011.04.039
– volume: 135
  start-page: 37
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib48
  article-title: Transcription factor E2-2 is an essential and specific regulator of plasmacytoid dendritic cell development
  publication-title: Cell
  doi: 10.1016/j.cell.2008.09.016
– volume: 523
  start-page: 597
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib191
  article-title: Parent stem cells can serve as niches for their daughter cells
  publication-title: Nature
  doi: 10.1038/nature14553
– volume: 96
  start-page: 11895
  year: 1999
  ident: 10.1016/j.devcel.2021.11.007_bib6
  article-title: Fgfr2 is required for limb outgrowth and lung-branching morphogenesis
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.96.21.11895
– volume: 9
  start-page: 113
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib220
  article-title: Neutrophil: A Cell with Many Roles in Inflammation or Several Cell Types?
  publication-title: Front. Physiol.
  doi: 10.3389/fphys.2018.00113
– volume: 5
  start-page: 16
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib254
  article-title: Pulmonary alveolar proteinosis
  publication-title: Nat. Rev. Dis. Primers
  doi: 10.1038/s41572-019-0066-3
– volume: 10
  start-page: 1579
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib159
  article-title: Single-Cell Transcriptomic Profiling of Pluripotent Stem Cell-Derived SCGB3A2+ Airway Epithelium
  publication-title: Stem Cell Reports
  doi: 10.1016/j.stemcr.2018.03.013
– volume: 20
  start-page: 852
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib64
  article-title: Plasmacytoid dendritic cells develop from Ly6D+ lymphoid progenitors distinct from the myeloid lineage
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-019-0420-3
– volume: 155
  start-page: 559
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib78
  article-title: Human neutrophils switch to an activated phenotype after homing to the lung irrespective of inflammatory disease
  publication-title: Clin. Exp. Immunol.
  doi: 10.1111/j.1365-2249.2008.03791.x
– volume: 5
  start-page: eaaw3851
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib203
  article-title: Single-cell connectomic analysis of adult mammalian lungs
  publication-title: Sci. Adv.
  doi: 10.1126/sciadv.aaw3851
– volume: 371
  start-page: 52
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib233
  article-title: Airway stem cells sense hypoxia and differentiate into protective solitary neuroendocrine cells
  publication-title: Science
  doi: 10.1126/science.aba0629
– volume: 114
  start-page: 806
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib286
  article-title: Pulmonary lymphangiectasia resulting from vascular endothelial growth factor-C overexpression during a critical period
  publication-title: Circ. Res.
  doi: 10.1161/CIRCRESAHA.114.303119
– volume: 157
  start-page: 60
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib256
  article-title: Environments of B cell development
  publication-title: Immunol. Lett.
  doi: 10.1016/j.imlet.2013.11.011
– volume: 159
  start-page: 245
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib5
  article-title: Tissue-resident innate immunity in the lung
  publication-title: Immunology
  doi: 10.1111/imm.13143
– volume: 202
  start-page: 1636
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib59
  article-title: A single-cell atlas of the human healthy airways
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201911-2199OC
– volume: 121
  start-page: 823
  year: 2005
  ident: 10.1016/j.devcel.2021.11.007_bib135
  article-title: Identification of bronchioalveolar stem cells in normal lung and lung cancer
  publication-title: Cell
  doi: 10.1016/j.cell.2005.03.032
– volume: 121
  start-page: 2031
  year: 1995
  ident: 10.1016/j.devcel.2021.11.007_bib74
  article-title: Progenitor cells of the adult human airway involved in submucosal gland development
  publication-title: Development
  doi: 10.1242/dev.121.7.2031
– volume: 39
  start-page: 817
  year: 1995
  ident: 10.1016/j.devcel.2021.11.007_bib20
  article-title: Role of platelet-derived growth factors in mouse development
  publication-title: Int. J. Dev. Biol.
– volume: 566
  start-page: 496
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib31
  article-title: The single-cell transcriptional landscape of mammalian organogenesis
  publication-title: Nature
  doi: 10.1038/s41586-019-0969-x
– volume: 52
  start-page: 617
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib261
  article-title: Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2020.01.009
– volume: 35
  start-page: 4507
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib49
  article-title: Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btz250
– volume: 317
  start-page: L347
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib65
  article-title: Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00475.2018
– volume: 28
  start-page: 236
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib43
  article-title: Col2CreER(T2), a mouse model for a chondrocyte-specific and inducible gene deletion
  publication-title: Eur. Cell. Mater.
  doi: 10.22203/eCM.v028a16
– volume: 201
  start-page: 1209
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib116
  article-title: Localization of Macrophages in the Human Lung via Design-based Stereology
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201911-2105OC
– volume: 50
  start-page: 505
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib292
  article-title: Spatial and Temporal Mapping of Human Innate Lymphoid Cells Reveals Elements of Tissue Specificity
  publication-title: Immunity
  doi: 10.1016/j.immuni.2019.01.012
– volume: 107
  start-page: 281
  year: 1970
  ident: 10.1016/j.devcel.2021.11.007_bib162
  article-title: Ultrastructure of cells in the human bronchial submucosal glands
  publication-title: J. Anat.
– volume: 37
  start-page: 409
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib122
  article-title: Nonmalignant Adult Thoracic Lymphatic Disorders
  publication-title: Clin. Chest Med.
  doi: 10.1016/j.ccm.2016.04.004
– volume: 4
  start-page: e126556
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib171
  article-title: Single cell RNA sequencing identifies unique inflammatory airspace macrophage subsets
  publication-title: JCI Insight
  doi: 10.1172/jci.insight.126556
– volume: 39
  start-page: 599
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib125
  article-title: Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes
  publication-title: Immunity
  doi: 10.1016/j.immuni.2013.08.007
– volume: 4
  start-page: eaax0416
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib155
  article-title: Stromal cells maintain immune cell homeostasis in adipose tissue via production of interleukin-33
  publication-title: Sci. Immunol.
  doi: 10.1126/sciimmunol.aax0416
– volume: 106
  start-page: 12771
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib216
  article-title: Basal cells as stem cells of the mouse trachea and human airway epithelium
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0906850106
– volume: 121
  start-page: 2855
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib38
  article-title: Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI57673
– volume: 10
  start-page: 60
  year: 1996
  ident: 10.1016/j.devcel.2021.11.007_bib137
  article-title: The T/ebp null mouse: thyroid-specific enhancer-binding protein is essential for the organogenesis of the thyroid, lung, ventral forebrain, and pituitary
  publication-title: Genes Dev.
  doi: 10.1101/gad.10.1.60
– volume: 3
  start-page: e121252
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib240
  article-title: Wilms’ tumor 1 drives fibroproliferation and myofibroblast transformation in severe fibrotic lung disease
  publication-title: JCI Insight
  doi: 10.1172/jci.insight.121252
– volume: 105
  start-page: 2783
  year: 2005
  ident: 10.1016/j.devcel.2021.11.007_bib121
  article-title: Vessel wall-derived endothelial cells rapidly proliferate because they contain a complete hierarchy of endothelial progenitor cells
  publication-title: Blood
  doi: 10.1182/blood-2004-08-3057
– volume: 195
  start-page: 3978
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib239
  article-title: Fibrocytes Regulate Wilms Tumor 1-Positive Cell Accumulation in Severe Fibrotic Lung Disease
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1500963
– volume: 10
  start-page: 1021
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib258
  article-title: Resident interstitial lung fibroblasts and their role in alveolar stem cell niche development, homeostasis, injury, and regeneration
  publication-title: Stem Cells Transl. Med.
  doi: 10.1002/sctm.20-0526
– volume: 47
  start-page: 14
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib275
  article-title: Efficient temporally-controlled targeted mutagenesis in smooth muscle cells of the adult mouse
  publication-title: Genesis
  doi: 10.1002/dvg.20448
– start-page: 326
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib235
  article-title: Basophils—Role in Immunity
– volume: 35
  start-page: 1566
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib167
  article-title: Origin and characterization of alpha smooth muscle actin-positive cells during murine lung development
  publication-title: Stem Cells
  doi: 10.1002/stem.2615
– volume: 9
  start-page: 2193
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib204
  article-title: An Optimized Protocol for the Isolation and Functional Analysis of Human Lung Mast Cells
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.02193
– volume: 18
  start-page: 456
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib133
  article-title: Regulatory T cells mediated immunomodulation during asthma: a therapeutic standpoint
  publication-title: J. Transl. Med.
  doi: 10.1186/s12967-020-02632-1
– volume: 138
  start-page: 3169
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib287
  article-title: Mesothelial- and epithelial-derived FGF9 have distinct functions in the regulation of lung development
  publication-title: Development
  doi: 10.1242/dev.065110
– volume: 11
  start-page: 2485
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib89
  article-title: Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-16239-z
– volume: 248
  start-page: 882
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib99
  article-title: Generation and validation of novel conditional flox and inducible Cre alleles targeting fibroblast growth factor 18 (Fgf18)
  publication-title: Dev. Dyn.
  doi: 10.1002/dvdy.85
– volume: 315
  start-page: L991
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib281
  article-title: Characterization of human PDGFR-β-positive pericytes from IPF and non-IPF lungs
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00289.2018
– volume: 170
  start-page: 1149
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib148
  article-title: Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6
  publication-title: Cell
  doi: 10.1016/j.cell.2017.07.028
– volume: 197
  start-page: 1045
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib248
  article-title: Depletion of Airway Submucosal Glands and TP63+KRT5+ Basal Cells in Obliterative Bronchiolitis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201707-1368OC
– volume: 124
  start-page: 53
  year: 1997
  ident: 10.1016/j.devcel.2021.11.007_bib18
  article-title: Involvement of Sonic hedgehog (Shh) in mouse embryonic lung growth and morphogenesis
  publication-title: Development
  doi: 10.1242/dev.124.1.53
– volume: 34
  start-page: 1017
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib75
  article-title: Cells of origin of lung cancers: lessons from mouse studies
  publication-title: Genes Dev.
  doi: 10.1101/gad.338228.120
– volume: 16
  start-page: 129
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib300
  article-title: Tamoxifen-inducible Cre-recombination in articular chondrocytes of adult Col2a1-CreER(T2) transgenic mice
  publication-title: Osteoarthritis Cartilage
  doi: 10.1016/j.joca.2007.08.001
– volume: 47
  start-page: 129
  year: 1999
  ident: 10.1016/j.devcel.2021.11.007_bib62
  article-title: HTI56, an integral membrane protein specific to human alveolar type I cells
  publication-title: J. Histochem. Cytochem.
  doi: 10.1177/002215549904700202
– volume: 27
  start-page: 806
  year: 2021
  ident: 10.1016/j.devcel.2021.11.007_bib33
  article-title: Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition
  publication-title: Nat. Med.
  doi: 10.1038/s41591-021-01332-7
– volume: 518
  start-page: 547
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib90
  article-title: Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors
  publication-title: Nature
  doi: 10.1038/nature13989
– volume: 147
  start-page: dev181032
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib100
  article-title: Identification of an FGF18-expressing alveolar myofibroblast that is developmentally cleared during alveologenesis
  publication-title: Development
  doi: 10.1242/dev.181032
– volume: 19
  start-page: 255
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib178
  article-title: Heterogeneity of neutrophils
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/s41577-019-0141-8
– volume: 574
  start-page: 365
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib199
  article-title: Decoding human fetal liver haematopoiesis
  publication-title: Nature
  doi: 10.1038/s41586-019-1652-y
– volume: 137
  start-page: 2179
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib82
  article-title: DCAMKL-1 expression identifies Tuft cells rather than stem cells in the adult mouse intestinal epithelium
  publication-title: Gastroenterology
  doi: 10.1053/j.gastro.2009.06.072
– volume: 33
  start-page: 999
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib149
  article-title: Progenitors of secondary crest myofibroblasts are developmentally committed in early lung mesoderm
  publication-title: Stem Cells
  doi: 10.1002/stem.1911
– volume: 348
  start-page: 1
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib10
  article-title: Dendritic cell subsets and locations
  publication-title: Int. Rev. Cell Mol. Biol.
  doi: 10.1016/bs.ircmb.2019.07.004
– volume: 140
  start-page: 3051
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib70
  article-title: Notch controls retinal blood vessel maturation and quiescence
  publication-title: Development
  doi: 10.1242/dev.093351
– volume: 55
  start-page: 688
  year: 2000
  ident: 10.1016/j.devcel.2021.11.007_bib111
  article-title: The development of the immune system during pregnancy and early life
  publication-title: Allergy
  doi: 10.1034/j.1398-9995.2000.00118.x
– volume: 145
  start-page: dev163014
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib46
  article-title: Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation
  publication-title: Development
  doi: 10.1242/dev.163014
– volume: 282
  start-page: 114
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib126
  article-title: Biomarkers for evaluation of mast cell and basophil activation
  publication-title: Immunol. Rev.
  doi: 10.1111/imr.12639
– volume: 28
  start-page: 2175
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib243
  article-title: The Prox1-Vegfr3 feedback loop maintains the identity and the number of lymphatic endothelial cell progenitors
  publication-title: Genes Dev.
  doi: 10.1101/gad.216226.113
– volume: 26
  start-page: 482
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib15
  article-title: The cellular and physiological basis for lung repair and regeneration: past, present, and future
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2020.03.009
– volume: 5
  start-page: 763
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib80
  article-title: Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function
  publication-title: Proc. Am. Thorac. Soc.
  doi: 10.1513/pats.200803-025HR
– volume: 298
  start-page: L210
  year: 2010
  ident: 10.1016/j.devcel.2021.11.007_bib145
  article-title: Mechanisms of Ca2+-stimulated fluid secretion by porcine bronchial submucosal gland serous acinar cells
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00342.2009
– volume: 16
  start-page: 161
  year: 2015
  ident: 10.1016/j.devcel.2021.11.007_bib114
  article-title: IL-25-responsive, lineage-negative KLRG1(hi) cells are multipotential ‘inflammatory’ type 2 innate lymphoid cells
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3078
– volume: 16
  start-page: 180
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib58
  article-title: Transcriptional control of endothelial cell development
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2009.01.014
– volume: 1
  start-page: 719
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib105
  article-title: Isolation and in vitro characterization of basal and submucosal gland duct stem/progenitor cells from human proximal airways
  publication-title: Stem Cells Transl. Med.
  doi: 10.5966/sctm.2012-0056
– volume: 58
  start-page: 92
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib92
  article-title: Innate B cells: the archetype of protective immune cells
  publication-title: Clin. Rev. Allergy Immunol.
  doi: 10.1007/s12016-019-08748-7
– volume: 157
  start-page: 316
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib61
  article-title: T helper type 17-related cytokine expression is increased in the bronchial mucosa of stable chronic obstructive pulmonary disease patients
  publication-title: Clin. Exp. Immunol.
  doi: 10.1111/j.1365-2249.2009.03965.x
– volume: 44
  start-page: 439
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib88
  article-title: Tissue-resident macrophage ontogeny and homeostasis
  publication-title: Immunity
  doi: 10.1016/j.immuni.2016.02.024
– volume: 12
  start-page: 6
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib161
  article-title: Logical development of the cell ontology
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-12-6
– volume: 114
  start-page: 6842
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib188
  article-title: Gel-forming mucins form distinct morphologic structures in airways
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1703228114
– volume: 140
  start-page: 280
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib63
  article-title: Human asthma is characterized by more IRF5+ M1 and CD206+ M2 macrophages and less IL-10+ M2-like macrophages around airways compared with healthy airways
  publication-title: J. Allergy Clin. Immunol.
  doi: 10.1016/j.jaci.2016.11.020
– volume: 129
  start-page: 2514
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib210
  article-title: Lymphatic impairment leads to pulmonary tertiary lymphoid organ formation and alveolar damage
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI125044
– volume: 106
  start-page: 9286
  year: 2009
  ident: 10.1016/j.devcel.2021.11.007_bib85
  article-title: Stem cells are dispensable for lung homeostasis but restore airways after injury
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0900668106
– volume: 108
  start-page: E1475
  year: 2011
  ident: 10.1016/j.devcel.2021.11.007_bib218
  article-title: Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1117988108
– volume: 28
  start-page: 79
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib103
  article-title: Derivation of airway basal stem cells from human pluripotent stem cells
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2020.09.017
– volume: 320
  start-page: 72
  year: 2008
  ident: 10.1016/j.devcel.2021.11.007_bib28
  article-title: Ascl3 expression marks a progenitor population of both acinar and ductal cells in mouse salivary glands
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2008.04.018
– volume: 214
  start-page: 2387
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib166
  article-title: Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20162152
– volume: 38
  start-page: 303
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib194
  article-title: Airway Macrophage and Dendritic Cell Subsets in the Resting Human Lung
  publication-title: Crit. Rev. Immunol.
  doi: 10.1615/CritRevImmunol.2018026459
– volume: 109
  start-page: 17531
  year: 2012
  ident: 10.1016/j.devcel.2021.11.007_bib238
  article-title: Functional characterization of pulmonary neuroendocrine cells in lung development, injury, and tumorigenesis
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1207238109
– volume: 91-92
  start-page: 51
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib214
  article-title: The elephant in the lung: Integrating lineage-tracing, molecular markers, and single cell sequencing data to identify distinct fibroblast populations during lung development and regeneration
  publication-title: Matrix Biol.
  doi: 10.1016/j.matbio.2020.05.002
– volume: 359
  start-page: 1118
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib173
  article-title: Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells
  publication-title: Science
  doi: 10.1126/science.aam6603
– volume: 142
  start-page: 1545
  year: 2020
  ident: 10.1016/j.devcel.2021.11.007_bib245
  article-title: A Notch3-Marked Subpopulation of Vascular Smooth Muscle Cells Is the Cell of Origin for Occlusive Pulmonary Vascular Lesions
  publication-title: Circulation
  doi: 10.1161/CIRCULATIONAHA.120.045750
– volume: 228
  start-page: 1
  year: 2018
  ident: 10.1016/j.devcel.2021.11.007_bib22
  article-title: Transcription factors regulating embryonic development of pulmonary vasculature
  publication-title: Adv. Anat. Embryol. Cell Biol.
  doi: 10.1007/978-3-319-68483-3_1
– volume: 59
  start-page: 101
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib237
  article-title: Human lung tissue resident memory T cells in health and disease
  publication-title: Curr. Opin. Immunol.
  doi: 10.1016/j.coi.2019.05.011
– volume: 68
  start-page: 185
  issue: Suppl 185
  year: 1966
  ident: 10.1016/j.devcel.2021.11.007_bib253
  article-title: Development of the tracheal glands in man. Number, density, structure, shape, and distribution of mucous glands elucidated by quantitative studies of whole mounts
  publication-title: Acta Pathol. Microbiol. Scand.
– volume: 17
  start-page: 636
  year: 2016
  ident: 10.1016/j.devcel.2021.11.007_bib9
  article-title: IL-1β, IL-4 and IL-12 control the fate of group 2 innate lymphoid cells in human airway inflammation in the lungs
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3444
– volume: 508
  start-page: 397
  year: 2014
  ident: 10.1016/j.devcel.2021.11.007_bib51
  article-title: A committed precursor to innate lymphoid cells
  publication-title: Nature
  doi: 10.1038/nature13047
– volume: 14
  start-page: S226
  issue: Supplement_3
  year: 2017
  ident: 10.1016/j.devcel.2021.11.007_bib54
  article-title: Lymphatic vessels: the next frontier in lung transplant
  publication-title: Ann. Am. Thorac. Soc.
  doi: 10.1513/AnnalsATS.201606-465MG
– volume: 494
  start-page: 261
  year: 2013
  ident: 10.1016/j.devcel.2021.11.007_bib139
  article-title: A T-bet gradient controls the fate and function of CCR6-RORγt+ innate lymphoid cells
  publication-title: Nature
  doi: 10.1038/nature11813
– volume: 316
  start-page: L990
  year: 2019
  ident: 10.1016/j.devcel.2021.11.007_bib278
  article-title: Early studies of airway submucosal glands
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00068.2019
SSID ssj0016180
Score 2.625342
Snippet The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and...
The human lung plays vital roles in respiration, host defense and basic physiology. Recent technological advancements such as single-cell RNA sequencing and...
SourceID pubmedcentral
proquest
pubmed
crossref
elsevier
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 112
SubjectTerms cell cards
Cell Differentiation - genetics
CellCards
COVID
Databases as Topic
disease
Humans
lung
Lung - cytology
Lung - metabolism
Lung - physiology
LungMAP
regeneration
Regeneration - genetics
repair
resource
single cell
Single-Cell Analysis - methods
Title A census of the lung: CellCards from LungMAP
URI https://dx.doi.org/10.1016/j.devcel.2021.11.007
https://www.ncbi.nlm.nih.gov/pubmed/34936882
https://www.proquest.com/docview/2613295524
https://pubmed.ncbi.nlm.nih.gov/PMC9202574
Volume 57
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1bixMxFA6lIOyLuLpq3VUi7KNjM5kkM_GtFksRuwha6FvIbbAyTBfbLuy_33PmUqwKBV9nTkjmS85tci6EXIsiANd4nmhb8kQoy5JCOZV4yWKwUoMDhP8hFzdqvhSfV3I1INM-FwbDKjvZ38r0Rlp3T8YdmuPb9Xr8DXhVyALre4EeAzsF5DBWasEkvtXHw02CSpvuaUicIHWfPtfEeIV45yNeQPD0PdbyxKay_1ZPf5uff0ZR_qaWZk_I486epJN2yedkEOun5FHbYfL-GXk3oR6bWWzppqRg69EKmPsDncaqmmK6FcX0EvoFHi4mXy_Icvbp-3SedA0SAEqud4lPoyswN7ZwzqaO5TotvJM81yoXQZU5CxrsA11aK9I8MuEV484FIbV3WRGy52RYb-r4klBmowusdACmFKDWC4_FpbTlqecBXLYRyXpcjO-qh2MTi8r0YWI_TYumQTTBsTCA5ogkh1G3bfWME_R5D7k5OgUGBPyJkW_7HTLAIHjrYeu42W8NuIgZ11Jy-IYX7Y4d1pIJnSlAEOY92ssDARbfPn5Tr380Rbg1TC5z8eq_V3xJzjimUjAMKbwiw92vfXwNBs7OvWlO8AONT_bp
linkProvider Elsevier
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1bb9MwFLbGEGIvaFxXxsBIPBLqOLYT89ZVTB20ExKd1DfLt4hOVTptLRL_fufkUlGGVInX5Fh2Pvvc4nMh5IMoAnCN54m2JU-EsiwplFOJlywGKzU4QPgfcnKhRpfi60zO9siwy4XBsMpW9jcyvZbW7ZN-i2b_ej7v_wBeFbLA-l6gx8BOeUAegjWgMK7rfHa6uUpQad0-DakTJO_y5-ogrxB_-Yg3EDz9hMU8savsv_XTffvz7zDKP_TS2SF50hqUdNCs-SnZi9Uz8qhpMfn7Ofk4oB67WdzSZUnB2KML4O7PdBgXiyHmW1HML6FjeDgZfH9BLs--TIejpO2QAFhyvUp8Gl2BybGFczZ1LNdp4Z3kuVa5CKrMWdBgIOjSWpHmkQmvGHcuCKm9y4qQvST71bKKR4QyG11gpQM0pQC9XnisLqUtTz0P4LP1SNbhYnxbPhy7WCxMFyd2ZRo0DaIJnoUBNHsk2Yy6bspn7KDPO8jN1jEwIOF3jHzf7ZABDsFrD1vF5frWgI-YcS0lh2941ezYZi2Z0JkCBGHerb3cEGD17e031fxnXYVbw-QyF6__e8XvyOPRdDI24_OLb8fkgGNeBcP4wjdkf3Wzjidg7azc2_o03wESz_oQ
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=A+census+of+the+lung%3A+CellCards+from+LungMAP&rft.jtitle=Developmental+cell&rft.au=Sun%2C+Xin&rft.au=Perl%2C+Anne-Karina&rft.au=Li%2C+Rongbo&rft.au=Bell%2C+Sheila+M.&rft.date=2022-01-10&rft.issn=1534-5807&rft.volume=57&rft.issue=1&rft.spage=112&rft.epage=145.e2&rft_id=info:doi/10.1016%2Fj.devcel.2021.11.007&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_devcel_2021_11_007
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1534-5807&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1534-5807&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1534-5807&client=summon