PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA
Pipeline Diversity Analysis (PDA) is an open-source, web-based tool that allows the exploration of polymorphism in large datasets of heterogeneous DNA sequences, and can be used to create secondary polymorphism databases for different taxonomic groups, such as the Drosophila Polymorphism Database (D...
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Published in | Nucleic acids research Vol. 34; no. suppl-2; pp. W632 - W634 |
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Main Authors | , |
Format | Journal Article |
Language | English |
Published |
England
Oxford University Press
01.07.2006
Oxford Publishing Limited (England) |
Subjects | |
Online Access | Get full text |
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Summary: | Pipeline Diversity Analysis (PDA) is an open-source, web-based tool that allows the exploration of polymorphism in large datasets of heterogeneous DNA sequences, and can be used to create secondary polymorphism databases for different taxonomic groups, such as the Drosophila Polymorphism Database (DPDB). A new version of the pipeline presented here, PDA v.2, incorporates substantial improvements, including new methods for data mining and grouping sequences, new criteria for data quality assessment and a better user interface. PDA is a powerful tool to obtain and synthesize existing empirical evidence on genetic diversity in any species or species group. PDA v.2 is available on the web at http://pda.uab.es/. |
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Bibliography: | http://www.nar.oupjournals.org/ istex:B611457B72D7E98DB7B6AF14628ECADDAC68F00B To whom correspondence should be addressed. Tel: +34 935 812 730; Fax: +34 935 812 387; Email: Antonio.Barbadilla@uab.es ark:/67375/HXZ-TXRRJ4GH-8 local:gkl080 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 ObjectType-Article-2 ObjectType-Feature-1 |
ISSN: | 0305-1048 1362-4962 |
DOI: | 10.1093/nar/gkl080 |