Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research

• Published in: Nucleic acids research Vol. 34; no. 1; pp. D500 - D503
• Main Authors: Stover, Nicholas A, Krieger, Cynthia J, Binkley, Gail, Dong, Qing, Fisk, Dianna G, Nash, Robert, Sethuraman, Anand, Weng, Shuai, Cherry, J. Michael
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.01.2006; Oxford Publishing Limited (England)
• Subjects: Animals; Databases, Genetic; Genome, Protozoan; Genomics; Internet; Models, Genetic; Protozoan Proteins - genetics; Saccharomyces; Software; Tetrahymena thermophila; Tetrahymena thermophila - genetics; User-Computer Interface
• ISSN: 0305-1048; 1362-4962
• DOI: 10.1093/nar/gkj054

We have developed a web-based resource (available at www.ciliate.org) for researchers studying the model ciliate organism Tetrahymena thermophila. Employing the underlying database structure and programming of the Saccharomyces Genome Database, the Tetrahymena Genome Database (TGD) integrates the wealth of knowledge generated by the Tetrahymena research community about genome structure, genes and gene products with the newly sequenced macronuclear genome determined by The Institute for Genomic Research (TIGR). TGD provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus in our graphical genome browser, gene product annotations utilizing the Gene Ontology, links to published literature about the gene and more. TGD also displays automatic annotations generated for the gene models predicted by TIGR. A variety of tools are available at TGD for searching the Tetrahymena genome, its literature and information about members of the research community.