Integrated proteome and malonylome analyses reveal the potential meaning of TLN1 and ACTB in end-stage renal disease

• Published in: Proteome science Vol. 21; no. 1; pp. 1 - 18
• Main Authors: Tan, Ruqi, Li, Dandan, Hu, Nan, Qiu, Jing, Zeng, Zhipeng, Cai, Wanxia, Zhong, Yafang, Zhang, Xinzhou, Pai, Pearl, Wang, Kang, Tang, Donge, Dai, Yong
• Format: Journal Article
• Language: English
• Published: London BioMed Central Ltd 13.10.2023; BioMed Central; BMC
• Subjects: Acids; Blood platelets; Chronic kidney disease (CKD)3; Chronic kidney failure; Development and progression; Diabetes; Diabetic nephropathy; End-stage renal disease; End-stage renal disease (ESRD)4; Enzymes; Ethylenediaminetetraacetic acid; Hemodialysis; Immune system; Inflammation; Kidney diseases; Leukocytes (mononuclear); Liquid chromatography; Lysine; Lysine malonylation (Kmal)1; Mass spectroscopy; Peptides; Peripheral blood mononuclear cells; Platelet activation5; Post-translation; Post-translational modification; Post-translational modification (PTM)2; Proteins; Proteomes; Rap1 protein; Signal transduction; Type 2 diabetes; Germany
• ISSN: 1477-5956; 1477-5956
• DOI: 10.1186/s12953-023-00211-y

End-stage renal disease (ESRD) is a condition that is characterized by the loss of kidney function. ESRD patients suffer from various endothelial dysfunctions, inflammation, and immune system defects. Lysine malonylation (Kmal) is a recently discovered post-translational modification (PTM). Although Kmal has the ability to regulate a wide range of biological processes in various organisms, its specific role in ESRD is limited. In this study, the affinity enrichment and liquid chromatography-tandem mass spectrometry (LC-MS/MS) techniques have been used to create the first global proteome and malonyl proteome (malonylome) profiles of peripheral blood mononuclear cells (PBMCs) from twenty patients with ESRD and eighty-one controls. On analysis, 793 differentially expressed proteins (DEPs) and 12 differentially malonylated proteins (DMPs) with 16 Kmal sites were identified. The Rap1 signaling pathway and platelet activation pathway were found to be important in the development of chronic kidney disease (CKD), as were DMPs TLN1 and ACTB, as well as one malonylated site. One conserved Kmal motif was also discovered. These findings provided the first report on the Kmal profile in ESRD, which could be useful in understanding the potential role of lysine malonylation modification in the development of ESRD.