Probing structural transitions in both structured and disordered proteins using site-directed spin-labeling EPR spectroscopy

• Published in: Journal of peptide science Vol. 17; no. 5; pp. 315 - 328
• Main Authors: Longhi, Sonia, Belle, Valérie, Fournel, André, Guigliarelli, Bruno, Carrière, Frédéric
• Format: Journal Article
• Language: English
• Published: Chichester, UK John Wiley & Sons, Ltd 01.05.2011; Wiley
• Subjects: Biochemistry, Molecular Biology; Biophysics; Crystallography, X-Ray; disorder-to-order transitions; E.S.R; Electron Spin Resonance Spectroscopy - methods; EPR spectroscopy; human pancreatic lipase; Humans; hydrolase; induced folding; intrinsic disorder; lid opening; Life Sciences; Lipase - chemistry; Measles virus; Mutagenesis; Nitroxide; nucleoprotein; Nucleoproteins; Pancreas; Pancreatic ribonuclease; phosphoprotein; protein structural transitions; Protein Structure, Secondary; Protein Structure, Tertiary; Proteins - chemistry; Radicals; site-directed spin labeling; Spectroscopy; Spin probes; Triacylglycerol lipase; X-ray crystallography
• ISSN: 1075-2617; 1099-1387; 1099-1387
• DOI: 10.1002/psc.1344

EPR spectroscopy is a technique that specifically detects unpaired electrons. EPR‐sensitive reporter groups (spin labels or spin probes) can be introduced into biological systems via site‐directed spin‐labeling (SDSL). The basic strategy of SDSL involves the introduction of a paramagnetic group at a selected protein site. This is usually accomplished by cysteine‐substitution mutagenesis, followed by covalent modification of the unique sulfydryl group with a selective reagent bearing a nitroxide radical. In this review we briefly describe the theoretical principles of this well‐established approach and illustrate how we successfully applied it to investigate structural transitions in both human pancreatic lipase (HPL), a protein with a well‐defined α/β hydrolase fold, and the intrinsically disordered C‐terminal domain of the measles virus nucleoprotein (NTAIL) upon addition of ligands and/or protein partners. In both cases, SDSL EPR spectroscopy allowed us to document protein conformational changes at the residue level. The studies herein summarized show that this approach is not only particularly well‐suited to study IDPs that inherently escape atomistic description by X‐ray crystallography but also provides dynamic information on structural transitions occurring within well‐characterized structured proteins for which X‐ray crystallography can only provide snapshots of the initial and final stages. Copyright © 2011 European Peptide Society and John Wiley & Sons, Ltd. In this review we briefly describe the theoretical principles of site‐directed spin‐labeling EPR spectroscopy and illustrate how we successfully applied it to investigate structural transitions in both human pancreatic lipase (HPL), a well‐folded protein, and within the intrinsically disordered C‐terminal domain of the measles virus nucleoprotein (NTAIL) upon addition of ligands and/or protein partners.