A reverse genetics and genomics approach to gene paralog function and disease: Myokymia and the juxtaparanode

• Published in: American journal of human genetics Vol. 109; no. 9; pp. 1713 - 1723
• Main Authors: Marafi, Dana, Kozar, Nina, Duan, Ruizhi, Bradley, Stephen, Yokochi, Kenji, Al Mutairi, Fuad, Saadi, Nebal Waill, Whalen, Sandra, Brunet, Theresa, Kotzaeridou, Urania, Choukair, Daniela, Keren, Boris, Nava, Caroline, Kato, Mitsuhiro, Arai, Hiroshi, Froukh, Tawfiq, Faqeih, Eissa Ali, AlAsmari, Ali M., Saleh, Mohammed M., Pinto e Vairo, Filippo, Pichurin, Pavel N., Klee, Eric W., Schmitz, Christopher T., Grochowski, Christopher M., Mitani, Tadahiro, Herman, Isabella, Calame, Daniel G., Fatih, Jawid M., Du, Haowei, Coban-Akdemir, Zeynep, Pehlivan, Davut, Jhangiani, Shalini N., Gibbs, Richard A., Miyatake, Satoko, Matsumoto, Naomichi, Wagstaff, Laura J., Posey, Jennifer E., Lupski, James R., Meijer, Dies, Wagner, Matias
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.09.2022; Elsevier
• Subjects: Animals; Autoantibodies; Axons; bi-allelic variation; facial myokymia; gene and genome instability; genomic rearrangement; Genomics; Humans; Intracellular Signaling Peptides and Proteins - genetics; KCNA; LGI3; Mammals - genetics; Mice; multi-exonic CNV; Myokymia; Nerve Tissue Proteins - genetics; neurobiology of disease; peripheral nerve hyperexcitability syndromes; Phenotype; potassium channel complexes; Reverse Genetics; genomic rearrangement; neurobiology of disease; potassium channel complexes; LGI3; KCNA; gene and genome instability; peripheral nerve hyperexcitability syndromes; multi-exonic CNV; bi-allelic variation; facial myokymia
• ISSN: 0002-9297; 1537-6605
• DOI: 10.1016/j.ajhg.2022.07.006

The leucine-rich glioma-inactivated (LGI) family consists of four highly conserved paralogous genes, LGI1-4, that are highly expressed in mammalian central and/or peripheral nervous systems. LGI1 antibodies are detected in subjects with autoimmune limbic encephalitis and peripheral nerve hyperexcitability syndromes (PNHSs) such as Isaacs and Morvan syndromes. Pathogenic variations of LGI1 and LGI4 are associated with neurological disorders as disease traits including familial temporal lobe epilepsy and neurogenic arthrogryposis multiplex congenita 1 with myelin defects, respectively. No human disease has been reported associated with either LGI2 or LGI3. We implemented exome sequencing and family-based genomics to identify individuals with deleterious variants in LGI3 and utilized GeneMatcher to connect practitioners and researchers worldwide to investigate the clinical and electrophysiological phenotype in affected subjects. We also generated Lgi3-null mice and performed peripheral nerve dissection and immunohistochemistry to examine the juxtaparanode LGI3 microarchitecture. As a result, we identified 16 individuals from eight unrelated families with loss-of-function (LoF) bi-allelic variants in LGI3. Deep phenotypic characterization showed LGI3 LoF causes a potentially clinically recognizable PNHS trait characterized by global developmental delay, intellectual disability, distal deformities with diminished reflexes, visible facial myokymia, and distinctive electromyographic features suggestive of motor nerve instability. Lgi3-null mice showed reduced and mis-localized Kv1 channel complexes in myelinated peripheral axons. Our data demonstrate bi-allelic LoF variants in LGI3 cause a clinically distinguishable disease trait of PNHS, most likely caused by disturbed Kv1 channel distribution in the absence of LGI3. [Display omitted] Through the power of human paralog gene studies, worldwide family-based genomics analyses, and mouse studies, we define a potentially-recognizable peripheral hyperexcitability syndrome in 16 individuals with bi-allelic LGI3 variants and show that LGI3 co-localizes with juxta-paranodal voltage-gated potassium channels and its loss results in mis-localization of potassium channel complexes.