Soundscapes and deep learning enable tracking biodiversity recovery in tropical forests

• Published in: Nature communications Vol. 14; no. 1; pp. 6191 - 12
• Main Authors: Müller, Jörg, Mitesser, Oliver, Schaefer, H. Martin, Seibold, Sebastian, Busse, Annika, Kriegel, Peter, Rabl, Dominik, Gelis, Rudy, Arteaga, Alejandro, Freile, Juan, Leite, Gabriel Augusto, de Melo, Tomaz Nascimento, LeBien, Jack, Campos-Cerqueira, Marconi, Blüthgen, Nico, Tremlett, Constance J., Böttger, Dennis, Feldhaar, Heike, Grella, Nina, Falconí-López, Ana, Donoso, David A., Moriniere, Jerome, Buřivalová, Zuzana
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 17.10.2023; Nature Publishing Group; Nature Portfolio
• Subjects: 631/158/672; 631/601/18; Artificial neural networks; Automation; Bioacoustics; Biodiversity; Biodiversity hot spots; Biodiversity loss; Carbon sequestration; Community composition; Composition; Deep learning; DNA barcoding; Forests; Humanities and Social Sciences; Insects; Monitoring; multidisciplinary; Neural networks; New technology; Restoration; Science; Science (multidisciplinary); Species richness; Tropical forests; Vertebrates
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-023-41693-w

Tropical forest recovery is fundamental to addressing the intertwined climate and biodiversity loss crises. While regenerating trees sequester carbon relatively quickly, the pace of biodiversity recovery remains contentious. Here, we use bioacoustics and metabarcoding to measure forest recovery post-agriculture in a global biodiversity hotspot in Ecuador. We show that the community composition, and not species richness, of vocalizing vertebrates identified by experts reflects the restoration gradient. Two automated measures – an acoustic index model and a bird community composition derived from an independently developed Convolutional Neural Network - correlated well with restoration (adj-R² = 0.62 and 0.69, respectively). Importantly, both measures reflected composition of non-vocalizing nocturnal insects identified via metabarcoding. We show that such automated monitoring tools, based on new technologies, can effectively monitor the success of forest recovery, using robust and reproducible data. Cost-effective biodiversity monitoring through time is important for evidence-based conservation. Here, the authors show that automated bioacoustics monitoring can be used to track tropical forest recovery from agricultural abandonment, suggesting its use to assess restoration outcomes.