Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan

Recombination between isolates of different virus species has been known to be one of the sources of speciation. Weeds serve as mixing vessels for begomoviruses, infecting a wide range of economically important plants, thereby facilitating recombination. Chenopodium album is an economically importan...

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Published inViruses Vol. 14; no. 10; p. 2166
Main Authors Lal, Aamir, Kil, Eui-Joon, Vo, Thuy T. B, Wira Sanjaya, I Gusti Ngurah Prabu, Qureshi, Muhammad Amir, Nattanong, Bupi, Ali, Muhammad, Shuja, Malik Nawaz, Lee, Sukchan
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Abstract Recombination between isolates of different virus species has been known to be one of the sources of speciation. Weeds serve as mixing vessels for begomoviruses, infecting a wide range of economically important plants, thereby facilitating recombination. Chenopodium album is an economically important weed spread worldwide. Here, we present the molecular characterization of a novel recombinant begomovirus identified from C. album in Lahore, Pakistan. The complete DNA- A genome of the virus associated with the leaf distortion occurred in the infected C. album plants was cloned and sequenced. DNA sequence analysis showed that the nucleotide sequence of the virus shared 93% identity with those of the rose leaf curl virus and the duranta leaf curl virus. Interestingly, this newly identified virus is composed of open reading frames (ORFs) from different origins. Phylogenetic networks and complementary recombination detection methods revealed extensive recombination among the sequences. The infectious clone of the newly detected virus was found to be fully infectious in C. album and Nicotiana benthamiana as the viral DNA was successfully reconstituted from systemically infected tissues of inoculated plants, thus fulfilling Koch’s postulates. Our study reveals a new speciation of an emergent ssDNA plant virus associated with C. album through recombination and therefore, proposed the tentative name ‘Chenopodium leaf distortion virus’ (CLDV).
AbstractList Recombination between isolates of different virus species has been known to be one of the sources of speciation. Weeds serve as mixing vessels for begomoviruses, infecting a wide range of economically important plants, thereby facilitating recombination. Chenopodium album is an economically important weed spread worldwide. Here, we present the molecular characterization of a novel recombinant begomovirus identified from C. album in Lahore, Pakistan. The complete DNA- A genome of the virus associated with the leaf distortion occurred in the infected C. album plants was cloned and sequenced. DNA sequence analysis showed that the nucleotide sequence of the virus shared 93% identity with those of the rose leaf curl virus and the duranta leaf curl virus. Interestingly, this newly identified virus is composed of open reading frames (ORFs) from different origins. Phylogenetic networks and complementary recombination detection methods revealed extensive recombination among the sequences. The infectious clone of the newly detected virus was found to be fully infectious in C. album and Nicotiana benthamiana as the viral DNA was successfully reconstituted from systemically infected tissues of inoculated plants, thus fulfilling Koch’s postulates. Our study reveals a new speciation of an emergent ssDNA plant virus associated with C. album through recombination and therefore, proposed the tentative name ‘Chenopodium leaf distortion virus’ (CLDV).
Recombination between isolates of different virus species has been known to be one of the sources of speciation. Weeds serve as mixing vessels for begomoviruses, infecting a wide range of economically important plants, thereby facilitating recombination. Chenopodium album is an economically important weed spread worldwide. Here, we present the molecular characterization of a novel recombinant begomovirus identified from C. album in Lahore, Pakistan. The complete DNA- A genome of the virus associated with the leaf distortion occurred in the infected C. album plants was cloned and sequenced. DNA sequence analysis showed that the nucleotide sequence of the virus shared 93% identity with those of the rose leaf curl virus and the duranta leaf curl virus. Interestingly, this newly identified virus is composed of open reading frames (ORFs) from different origins. Phylogenetic networks and complementary recombination detection methods revealed extensive recombination among the sequences. The infectious clone of the newly detected virus was found to be fully infectious in C. album and Nicotiana benthamiana as the viral DNA was successfully reconstituted from systemically infected tissues of inoculated plants, thus fulfilling Koch’s postulates. Our study reveals a new speciation of an emergent ssDNA plant virus associated with C. album through recombination and therefore, proposed the tentative name ‘Chenopodium leaf distortion virus’ (CLDV).
Audience Academic
Author Ali, Muhammad
Shuja, Malik Nawaz
Lal, Aamir
Lee, Sukchan
Vo, Thuy T. B
Kil, Eui-Joon
Nattanong, Bupi
Qureshi, Muhammad Amir
Wira Sanjaya, I Gusti Ngurah Prabu
AuthorAffiliation 3 Agricultural Science and Technology Research Institute, Andong National University, Andong 36729, Korea
2 Department of Plant Medicals, College of Life Sciences, Andong National University, Andong 36729, Korea
4 Department of Life Sciences, School of Science, University of Management and Technology (UMT), Lahore 54770, Pakistan
5 Department of Microbiology, Kohat University of Science and Technology, Kohat 26000, Pakistan
1 Department of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Korea
AuthorAffiliation_xml – name: 4 Department of Life Sciences, School of Science, University of Management and Technology (UMT), Lahore 54770, Pakistan
– name: 2 Department of Plant Medicals, College of Life Sciences, Andong National University, Andong 36729, Korea
– name: 5 Department of Microbiology, Kohat University of Science and Technology, Kohat 26000, Pakistan
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Snippet Recombination between isolates of different virus species has been known to be one of the sources of speciation. Weeds serve as mixing vessels for...
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SubjectTerms begomovirus
Chenopodium album
Chenopodium leaf distortion virus
Cloning
Discovery and exploration
Enzymes
Flowers & plants
Genetic aspects
Genomes
Identification and classification
Infections
Leaf-curl
Nucleotide sequence
Open reading frames
Origin of species
Phylogenetics
Phylogeny
Plant viruses
Proteins
Recombination
Sequence analysis
Speciation
Virus diseases of plants
Virus research
Viruses
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Title Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan
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https://doaj.org/article/9c504e11d9ad42809ac3b64c0f2374ae
Volume 14
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