On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach

Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main dynamical features of interest. In this paper we consider a piecewise affine model of a genetic regulatory network, in which the parameters describ...

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Published inJournal of mathematical biology Vol. 83; no. 6-7; p. 64
Main Authors Pasquini, Mirko, Angeli, David
Format Journal Article
LanguageEnglish
Published Berlin/Heidelberg Springer Berlin Heidelberg 01.12.2021
Springer Nature B.V
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Abstract Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main dynamical features of interest. In this paper we consider a piecewise affine model of a genetic regulatory network, in which the parameters describing the production function are affected by polytopic uncertainties. In the first part of the paper, after recalling how the problem of finding a Lyapunov function is solved in the nominal case, we present the considered polytopic uncertain system and then, after describing how to deal with sliding mode solutions, we prove a result of existence of a parameter dependent Lyapunov function subject to the solution of a feasibility linear matrix inequalities problem. In the second part of the paper, based on the previously described Lyapunov function, we are able to determine a set of domains where the system is guaranteed to converge, with the exception of a zero measure set of times, independently from the uncertainty realization. Finally a three nodes network example shows the validity of the results.
AbstractList Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main dynamical features of interest. In this paper we consider a piecewise affine model of a genetic regulatory network, in which the parameters describing the production function are affected by polytopic uncertainties. In the first part of the paper, after recalling how the problem of finding a Lyapunov function is solved in the nominal case, we present the considered polytopic uncertain system and then, after describing how to deal with sliding mode solutions, we prove a result of existence of a parameter dependent Lyapunov function subject to the solution of a feasibility linear matrix inequalities problem. In the second part of the paper, based on the previously described Lyapunov function, we are able to determine a set of domains where the system is guaranteed to converge, with the exception of a zero measure set of times, independently from the uncertainty realization. Finally a three nodes network example shows the validity of the results.
Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main dynamical features of interest. In this paper we consider a piecewise affine model of a genetic regulatory network, in which the parameters describing the production function are affected by polytopic uncertainties. In the first part of the paper, after recalling how the problem of finding a Lyapunov function is solved in the nominal case, we present the considered polytopic uncertain system and then, after describing how to deal with sliding mode solutions, we prove a result of existence of a parameter dependent Lyapunov function subject to the solution of a feasibility linear matrix inequalities problem. In the second part of the paper, based on the previously described Lyapunov function, we are able to determine a set of domains where the system is guaranteed to converge, with the exception of a zero measure set of times, independently from the uncertainty realization. Finally a three nodes network example shows the validity of the results.Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main dynamical features of interest. In this paper we consider a piecewise affine model of a genetic regulatory network, in which the parameters describing the production function are affected by polytopic uncertainties. In the first part of the paper, after recalling how the problem of finding a Lyapunov function is solved in the nominal case, we present the considered polytopic uncertain system and then, after describing how to deal with sliding mode solutions, we prove a result of existence of a parameter dependent Lyapunov function subject to the solution of a feasibility linear matrix inequalities problem. In the second part of the paper, based on the previously described Lyapunov function, we are able to determine a set of domains where the system is guaranteed to converge, with the exception of a zero measure set of times, independently from the uncertainty realization. Finally a three nodes network example shows the validity of the results.
ArticleNumber 64
Author Pasquini, Mirko
Angeli, David
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Issue 6-7
Keywords Gene regulatory networks
92C42
Systems biology
Linear matrix inequalities
93D30
Lyapunov methods
Convergence analysis
Polytopic uncertainties
Language English
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Snippet Hybrid models of genetic regulatory networks allow for a simpler analysis with respect to fully detailed quantitative models, still maintaining the main...
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SubjectTerms Applications of Mathematics
Approximation
Biology
Chemical reactions
Control theory
Convergence
Convergence analysis
Engineering
Gene Regulatory Networks
Genes
Liapunov functions
Linear matrix inequalities
Lyapunov methods
Mathematical and Computational Biology
Mathematical models
Mathematics
Mathematics and Statistics
Parameters
Polytopic uncertainties
Systems biology
Systems stability
Transcription factors
Uncertainty
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Title On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach
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