Lsm7 phase-separated condensates trigger stress granule formation

• Published in: Nature communications Vol. 13; no. 1; p. 3701
• Main Authors: Lindström, Michelle, Chen, Lihua, Jiang, Shan, Zhang, Dan, Gao, Yuan, Zheng, Ju, Hao, Xinxin, Yang, Xiaoxue, Kabbinale, Arpitha, Thoma, Johannes, Metzger, Lisa C, Zhang, Deyuan Y, Zhu, Xuefeng, Liu, Huisheng, Gustafsson, Claes M, Burmann, Björn M, Winderickx, Joris, Sunnerhagen, Per, Liu, Beidong
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group 28.06.2022; Nature Publishing Group UK; Nature Portfolio
• Subjects: Age; Age related diseases; Biology; Condensates; Genomes; Glucose; Granular materials; Hydrophobicity; Liquid phases; Localization; Organelles; Phase separation; Protein expression; Protein seeding; Proteins; Yeasts
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-022-31282-8

Abstract Stress granules (SGs) are non-membranous organelles facilitating stress responses and linking the pathology of age-related diseases. In a genome-wide imaging-based phenomic screen, we identify Pab1 co-localizing proteins under 2-deoxy-D-glucose (2-DG) induced stress in Saccharomyces cerevisiae . We find that deletion of one of the Pab1 co-localizing proteins, Lsm7, leads to a significant decrease in SG formation. Under 2-DG stress, Lsm7 rapidly forms foci that assist in SG formation. The Lsm7 foci form via liquid-liquid phase separation, and the intrinsically disordered region and the hydrophobic clusters within the Lsm7 sequence are the internal driving forces in promoting Lsm7 phase separation. The dynamic Lsm7 phase-separated condensates appear to work as seeding scaffolds, promoting Pab1 demixing and subsequent SG initiation, seemingly mediated by RNA interactions. The SG initiation mechanism, via Lsm7 phase separation, identified in this work provides valuable clues for understanding the mechanisms underlying SG formation and SG-associated human diseases.