The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis fr...

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Bibliographic Details
Published inNucleic acids research Vol. 43; no. W1; pp. W109 - W116
Main Authors Darde, Thomas A, Sallou, Olivier, Becker, Emmanuelle, Evrard, Bertrand, Monjeaud, Cyril, Le Bras, Yvan, Jégou, Bernard, Collin, Olivier, Rolland, Antoine D, Chalmel, Frédéric
Format Journal Article
LanguageEnglish
Published England Oxford University Press 01.07.2015
Subjects
Animals
Computer Science
Data Mining
Female
Gametogenesis - genetics
Genomics
Humans
Information Retrieval
Internet
Life Sciences
Male
Mice
Rats
Software
Spermatogenesis - genetics
Web Server issue
The ReproGenomics Viewer (RGV)
Data sets
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Summary:We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.
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ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkv345