Dissection of temporal gene expression signatures of affected and spared muscle groups in dystrophin-deficient (mdx) mice

• Published in: Human molecular genetics Vol. 12; no. 15; pp. 1813 - 1821
• Main Authors: Porter, John D., Merriam, Anita P., Leahy, Patrick, Gong, Bendi, Khanna, Sangeeta
• Format: Journal Article
• Language: English
• Published: Oxford Oxford University Press 01.08.2003; Oxford Publishing Limited (England)
• Subjects: Animals; Biological and medical sciences; Disease Models, Animal; DNA Primers; Dystrophin - deficiency; Dystrophin - genetics; Dystrophin - metabolism; Fundamental and applied biological sciences. Psychology; Gene Expression; Mice; Mice, Inbred mdx; Molecular and cellular biology; Muscle, Skeletal - metabolism; Muscular Dystrophy, Duchenne - genetics; Oculomotor Muscles - metabolism; Oligonucleotide Array Sequence Analysis; Polymerase Chain Reaction; Signal Transduction; Time Factors; Genetics
• ISSN: 0964-6906; 1460-2083
• DOI: 10.1093/hmg/ddg197

Although dystrophin mutations are the proximate cause of Duchenne muscular dystrophy (DMD), interactions among heterogeneous downstream mechanisms may be key phenotypic determinants. Temporal gene expression profiling was used to identify and correlate diverse transcriptional patterns to one another and to the disease course, for both affected and spared muscle groups, in postnatal day 7–112 dystrophin-deficient (mdx) mice. While 719 transcripts were differentially expressed at one or more ages in leg muscle, only 56 genes were altered in the spared extraocular muscles (EOM). Contrasting molecular signatures of affected versus spared muscles provide compelling evidence that the absence of dystrophin alone is necessary but not sufficient to cause the patterned fibrosis, inflammation and failure of muscle regeneration characteristic of dystrophinopathy. Dystrophic and adaptive changes in the microarray profiles were further quantified using an aggregate disease load index (DLI) to measure stage-dependent transcriptional impact in both muscles. DLI analysis highlighted the divergent responses of EOM and leg muscle groups. Cellular process-specific DLIs in leg muscle identified positively correlated temporal expression profiles for some gene classes, and the independence of others, that are linked to major disease components. Data also showed a previously unrecognized transient and selective developmental delay in pre-necrotic mdx skeletal muscle that was confirmed by qPCR. Taken together, validation and targeting of signaling pathways responsible for the coordination of the fibrotic, proteolytic and inflammatory mechanisms shown here for mdx muscle may yield new therapeutic means of mitigating the devastating consequences of DMD.