Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction

• Published in: IEEE transactions on medical imaging Vol. 41; no. 6; pp. 1383 - 1399
• Main Authors: Sui, Yao, Afacan, Onur, Jaimes, Camilo, Gholipour, Ali, Warfield, Simon K.
• Format: Journal Article
• Language: English
• Published: United States IEEE 01.06.2022; The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
• Subjects: Brain - diagnostic imaging; Data acquisition; Datasets; Deep learning; generative neural network; High resolution; Humans; Image reconstruction; Image resolution; Imaging; Magnetic resonance imaging; Magnetic Resonance Imaging - methods; Medical imaging; Motion compensation; Neural networks; Neural Networks, Computer; Neuroimaging; Noise reduction; patient-specific learning; Radionuclide Imaging; Signal resolution; Signal to noise ratio; Spatial discrimination; Spatial resolution; super-resolution; Training
• ISSN: 0278-0062; 1558-254X; 1558-254X
• DOI: 10.1109/TMI.2022.3142610

The interpretation and analysis of Magnetic resonance imaging (MRI) benefit from high spatial resolution. Unfortunately, direct acquisition of high spatial resolution MRI is time-consuming and costly, which increases the potential for motion artifact, and suffers from reduced signal-to-noise ratio (SNR). Super-resolution reconstruction (SRR) is one of the most widely used methods in MRI since it allows for the trade-off between high spatial resolution, high SNR, and reduced scan times. Deep learning has emerged for improved SRR as compared to conventional methods. However, current deep learning-based SRR methods require large-scale training datasets of high-resolution images, which are practically difficult to obtain at a suitable SNR. We sought to develop a methodology that allows for dataset-free deep learning-based SRR, through which to construct images with higher spatial resolution and of higher SNR than can be practically obtained by direct Fourier encoding. We developed a dataset-free learning method that leverages a generative neural network trained for each specific scan or set of scans, which in turn, allows for SRR tailored to the individual patient. With the SRR from three short duration scans, we achieved high quality brain MRI at an isotropic spatial resolution of 0.125 cubic mm with six minutes of imaging time for T2 contrast and an average increase of 7.2 dB (34.2%) in SNR to these short duration scans. Motion compensation was achieved by aligning the three short duration scans together. We assessed our technique on simulated MRI data and clinical data acquired from 15 subjects. Extensive experimental results demonstrate that our approach achieved superior results to state-of-the-art methods, while in parallel, performed at reduced cost as scans delivered with direct high-resolution acquisition.