High-throughput sequencing-based assembly of chloroplast genomes of five pine tree species

Pinus plants are the largest existing group of gymnosperms and one of the most highly differentiated taxa. Due to its huge ecological, economic, and scientific value, the genetic diversity and the relationship between the intraspecific evolution of Pinus plants have gained wide attention. In this st...

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Published inMitochondrial DNA. Part B. Resources Vol. 5; no. 1; pp. 578 - 580
Main Authors Luo, Qunfeng, Yang, Zhangqi, Feng, Yuanheng, Jia, Jie, Tan, Jianhui, Yan, Peidong
Format Journal Article
LanguageEnglish
Published England Taylor & Francis 02.01.2020
Taylor & Francis Ltd
Taylor & Francis Group
Subjects
chloroplast genome
Chloroplasts
Codon bias
Evolution
Genetic diversity
Genomes
Gymnosperm
Gymnosperms
Next-generation sequencing
phylogenetic analysis
Pinus
Pinus elliottii
Rapid Communication
Gymnosperm
codon bias
phylogenetic analysis
chloroplast genome
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Summary:Pinus plants are the largest existing group of gymnosperms and one of the most highly differentiated taxa. Due to its huge ecological, economic, and scientific value, the genetic diversity and the relationship between the intraspecific evolution of Pinus plants have gained wide attention. In this study, the chloroplast genomes of several common pine trees in southwest and south China, including P. massoniana (masson pine), P. yunnanensis (yunnan pine), P. latteri (south asia pine), P. crassicorticea (la ya pine), and P. elliottii (slash pine), and entire cpDNA sequences were obtained. Characteristics including the structure, repeated sequence, and codon bias of the cpDNA for these five pine tree species were analyzed.
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ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2019.1710587