Subsistence strategies in traditional societies distinguish gut microbiomes
Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and t...
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| Published in | Nature communications Vol. 6; no. 1; p. 6505 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
25.03.2015
Nature Publishing Group Nature Pub. Group |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that
Treponema
are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional potential characterization, we discover these
Treponema
are diverse, fall outside of pathogenic clades and are similar to
Treponema succinifaciens
, a known carbohydrate metabolizer in swine. Gut
Treponema
are found in non-human primates and all traditional peoples studied to date, suggesting they are symbionts lost in urban-industrialized societies.
The gut microbiomes of urban-industrialized societies differ from those of traditional rural societies and hunter-gatherers. Here the authors perform a comparative analysis of available and new gut microbiome data to provide fresh insight into these differences. |
|---|---|
| AbstractList | Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that
Treponema
are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional potential characterization, we discover these
Treponema
are diverse, fall outside of pathogenic clades and are similar to
Treponema succinifaciens
, a known carbohydrate metabolizer in swine. Gut
Treponema
are found in non-human primates and all traditional peoples studied to date, suggesting they are symbionts lost in urban-industrialized societies.
The gut microbiomes of urban-industrialized societies differ from those of traditional rural societies and hunter-gatherers. Here the authors perform a comparative analysis of available and new gut microbiome data to provide fresh insight into these differences. Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that Treponema are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2-2.5 MB, coverage depth × 26-513) and functional potential characterization, we discover these Treponema are diverse, fall outside of pathogenic clades and are similar to Treponema succinifaciens, a known carbohydrate metabolizer in swine. Gut Treponema are found in non-human primates and all traditional peoples studied to date, suggesting they are symbionts lost in urban-industrialized societies. Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that Treponema are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional potential characterization, we discover these Treponema are diverse, fall outside of pathogenic clades and are similar to Treponema succinifaciens , a known carbohydrate metabolizer in swine. Gut Treponema are found in non-human primates and all traditional peoples studied to date, suggesting they are symbionts lost in urban-industrialized societies. |
| ArticleNumber | 6505 |
| Author | Obregon-Tito, Alexandra J. Zech Xu, Zhenjiang Lewis, Cecil M. Metcalf, Jessica Knight, Rob Van Treuren, Will Tito, Raul Y. Troncoso-Corzo, Luzmila Guija-Poma, Emilio Sankaranarayanan, Krithivasan Gaffney, Patrick M. Marin-Reyes, Luis Trujillo-Villarroel, Omar Clemente, Jose C. Spicer, Paul Lawson, Paul Warinner, Christina Ozga, Andrew T. Ursell, Luke K. Foster, Morris |
| Author_xml | – sequence: 1 givenname: Alexandra J. surname: Obregon-Tito fullname: Obregon-Tito, Alexandra J. organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA, Universidad Científica del Sur, City of Hope, NCI-designated Comprehensive Cancer Center – sequence: 2 givenname: Raul Y. surname: Tito fullname: Tito, Raul Y. organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA, Universidad Científica del Sur – sequence: 3 givenname: Jessica surname: Metcalf fullname: Metcalf, Jessica organization: Department of Chemistry and Biochemistry, University of Colorado – sequence: 4 givenname: Krithivasan surname: Sankaranarayanan fullname: Sankaranarayanan, Krithivasan organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA – sequence: 5 givenname: Jose C. surname: Clemente fullname: Clemente, Jose C. organization: Icahn School of Medicine at Mount Sinai – sequence: 6 givenname: Luke K. surname: Ursell fullname: Ursell, Luke K. organization: Department of Chemistry and Biochemistry, University of Colorado – sequence: 7 givenname: Zhenjiang surname: Zech Xu fullname: Zech Xu, Zhenjiang organization: Department of Chemistry and Biochemistry, University of Colorado – sequence: 8 givenname: Will surname: Van Treuren fullname: Van Treuren, Will organization: Department of Chemistry and Biochemistry, University of Colorado – sequence: 9 givenname: Rob orcidid: 0000-0002-0975-9019 surname: Knight fullname: Knight, Rob organization: Departments of Pediatrics and Computer Science & Engineering University of California San Diego – sequence: 10 givenname: Patrick M. surname: Gaffney fullname: Gaffney, Patrick M. organization: Oklahoma Medical Research Foundation – sequence: 11 givenname: Paul surname: Spicer fullname: Spicer, Paul organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA – sequence: 12 givenname: Paul orcidid: 0000-0002-0113-4751 surname: Lawson fullname: Lawson, Paul organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA – sequence: 13 givenname: Luis surname: Marin-Reyes fullname: Marin-Reyes, Luis organization: Instituto Nacional de Salud – sequence: 14 givenname: Omar surname: Trujillo-Villarroel fullname: Trujillo-Villarroel, Omar organization: Instituto Nacional de Salud – sequence: 15 givenname: Morris surname: Foster fullname: Foster, Morris organization: Old Dominion University – sequence: 16 givenname: Emilio surname: Guija-Poma fullname: Guija-Poma, Emilio organization: Universidad Científica del Sur – sequence: 17 givenname: Luzmila surname: Troncoso-Corzo fullname: Troncoso-Corzo, Luzmila organization: Universidad Científica del Sur – sequence: 18 givenname: Christina surname: Warinner fullname: Warinner, Christina organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA – sequence: 19 givenname: Andrew T. surname: Ozga fullname: Ozga, Andrew T. organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA – sequence: 20 givenname: Cecil M. surname: Lewis fullname: Lewis, Cecil M. email: cmlewis@ou.edu organization: Department of Anthropology, University of Oklahoma, Dale Hall Tower, 521 Norman, Oklahoma 73019, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25807110$$D View this record in MEDLINE/PubMed |
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| Snippet | Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship... |
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| SubjectTerms | 631/158/670 631/158/858 631/326/2565/2134 631/326/2565/547 Actinobacteria - genetics Actinobacteria - isolation & purification Adolescent Adult Agriculture Bacteroidetes - genetics Bacteroidetes - isolation & purification Biodiversity Child Child, Preschool Classification Diet Diet, Paleolithic Female Firmicutes - genetics Firmicutes - isolation & purification Gastrointestinal Microbiome - genetics High-Throughput Nucleotide Sequencing Humanities and Social Sciences Humans Industrial Development Infant Male Metagenome - genetics Middle Aged multidisciplinary Oklahoma Peru RNA, Ribosomal, 16S - genetics Science Science (multidisciplinary) Traditional farming Treponema - genetics Treponema - isolation & purification Young Adult |
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| Title | Subsistence strategies in traditional societies distinguish gut microbiomes |
| URI | https://link.springer.com/article/10.1038/ncomms7505 https://www.ncbi.nlm.nih.gov/pubmed/25807110 https://www.proquest.com/docview/1666292993 https://www.proquest.com/docview/1667346503 https://pubmed.ncbi.nlm.nih.gov/PMC4386023 |
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