Genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada

Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada was for the first time investigated. Forty-one Streptomyces spp. isolates were ret...

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Published inSystematic and applied microbiology Vol. 31; no. 6; pp. 474 - 484
Main Authors St-Onge, Renée, Goyer, Claudia, Coffin, Robert, Filion, Martin
Format Journal Article
LanguageEnglish
Published München Elsevier GmbH 01.12.2008
Elsevier
Subjects
16S rRNA
bacterial diseases of plants
Bacterial plant pathogens
Bacterial Proteins - genetics
Bacteriology
Biological and medical sciences
Canada
Common scab
DNA Fingerprinting
Fundamental and applied biological sciences. Psychology
Genes, Bacterial
Genetic diversity
Genetic Variation
Genetics
Genomic Islands - genetics
geographical distribution
Melanins - genetics
Microbiology
Molecular Sequence Data
molecular systematics
Phenotype
phylogeny
Phytopathology. Animal pests. Plant and forest protection
Plant Diseases - microbiology
plant pathogenic bacteria
Plant Tubers - microbiology
Polymerase Chain Reaction
Polymorphism, Genetic
Potato
potatoes
Rep-PCR
ribosomal RNA
RNA, Ribosomal, 16S - genetics
RpoB
sequence analysis
Solanum tuberosum
Solanum tuberosum - microbiology
Streptomyces
Streptomyces - classification
Streptomyces - genetics
Streptomyces - isolation & purification
Streptomyces - pathogenicity
Streptomyces acidiscabies
Streptomyces scabies
Streptomyces spp
Systematics. Structure, properties and multiplication. Genetics
TomA
TxtA
TxtC
New Brunswick
Canada
Prince Edward Island
Nova Scotia
Potato
Common scab
16S rRNA
TxtC
TxtA
Streptomyces spp
Rep-PCR
RpoB
TomA
Genetic diversity
Plant pathogen
Actinomycetales
Dicotyledones
Angiospermae
Molecular epidemiology
16S-RNA
Bacteria
Solanaceae
Eastern Canada
Streptomycetaceae
Solanum tuberosum
Streptomyces
Polymerase chain reaction
Actinomycetes
Spermatophyta
Tuber plant
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Abstract Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada was for the first time investigated. Forty-one Streptomyces spp. isolates were retrieved from necrotic lesions of potato tubers harvested from different regions of the Canadian provinces New-Brunswick, Nova Scotia and Prince-Edward-Island. Most isolates were closely related to known pathogenic S. scabies strains on the basis of partial 16S ribosomal (r) RNA and rpoB gene sequence analyses. Two isolates were identified as pathogenic species of Streptomyces acidiscabies. To our knowledge, this species has never been previously isolated in these areas. Genome fingerprinting studies using repetitive elements (rep) polymerase chain reactions (PCR) revealed 10 distinct genetic groups in eastern Canada. The geographical distribution of the genetic groups was region-dependant. Pathogenicity- and virulence-related genes ( txtA, txtC, and tomA) were PCR-amplified from each isolate, and nucleotide sequence analysis of partial gene fragments revealed slight polymorphisms in both txtA and txtC genes. No genetic variation was noted in the partial tomA gene sequences.
AbstractList Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada was for the first time investigated. Forty-one Streptomyces spp. isolates were retrieved from necrotic lesions of potato tubers harvested from different regions of the Canadian provinces New-Brunswick, Nova Scotia and Prince-Edward-Island. Most isolates were closely related to known pathogenic S. scabies strains on the basis of partial 16S ribosomal (r) RNA and rpoB gene sequence analyses. Two isolates were identified as pathogenic species of Streptomyces acidiscabies. To our knowledge, this species has never been previously isolated in these areas. Genome fingerprinting studies using repetitive elements (rep) polymerase chain reactions (PCR) revealed 10 distinct genetic groups in eastern Canada. The geographical distribution of the genetic groups was region-dependant. Pathogenicity- and virulence-related genes (txtA, txtC, and tomA) were PCR-amplified from each isolate, and nucleotide sequence analysis of partial gene fragments revealed slight polymorphisms in both txtA and txtC genes. No genetic variation was noted in the partial tomA gene sequences.
Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada was for the first time investigated. Forty-one Streptomyces spp. isolates were retrieved from necrotic lesions of potato tubers harvested from different regions of the Canadian provinces New-Brunswick, Nova Scotia and Prince-Edward-Island. Most isolates were closely related to known pathogenic S. scabies strains on the basis of partial 16S ribosomal (r) RNA and rpoB gene sequence analyses. Two isolates were identified as pathogenic species of Streptomyces acidiscabies. To our knowledge, this species has never been previously isolated in these areas. Genome fingerprinting studies using repetitive elements (rep) polymerase chain reactions (PCR) revealed 10 distinct genetic groups in eastern Canada. The geographical distribution of the genetic groups was region-dependant. Pathogenicity- and virulence-related genes ( txtA, txtC, and tomA) were PCR-amplified from each isolate, and nucleotide sequence analysis of partial gene fragments revealed slight polymorphisms in both txtA and txtC genes. No genetic variation was noted in the partial tomA gene sequences.
Author Filion, Martin
St-Onge, Renée
Coffin, Robert
Goyer, Claudia
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Issue 6
Keywords Potato
Common scab
16S rRNA
TxtC
TxtA
Streptomyces spp
Rep-PCR
RpoB
TomA
Genetic diversity
Plant pathogen
Actinomycetales
Dicotyledones
Angiospermae
Molecular epidemiology
16S-RNA
Bacteria
Solanaceae
Eastern Canada
Streptomycetaceae
Solanum tuberosum
Streptomyces
Polymerase chain reaction
Actinomycetes
Spermatophyta
Tuber plant
Language English
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Snippet Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of...
Common scab is an important disease of potato caused by Streptomyces scabies and other closely related species. In this study, the genetic diversity of...
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SubjectTerms 16S rRNA
bacterial diseases of plants
Bacterial plant pathogens
Bacterial Proteins - genetics
Bacteriology
Biological and medical sciences
Canada
Common scab
DNA Fingerprinting
Fundamental and applied biological sciences. Psychology
Genes, Bacterial
Genetic diversity
Genetic Variation
Genetics
Genomic Islands - genetics
geographical distribution
Melanins - genetics
Microbiology
Molecular Sequence Data
molecular systematics
Phenotype
phylogeny
Phytopathology. Animal pests. Plant and forest protection
Plant Diseases - microbiology
plant pathogenic bacteria
Plant Tubers - microbiology
Polymerase Chain Reaction
Polymorphism, Genetic
Potato
potatoes
Rep-PCR
ribosomal RNA
RNA, Ribosomal, 16S - genetics
RpoB
sequence analysis
Solanum tuberosum
Solanum tuberosum - microbiology
Streptomyces
Streptomyces - classification
Streptomyces - genetics
Streptomyces - isolation & purification
Streptomyces - pathogenicity
Streptomyces acidiscabies
Streptomyces scabies
Streptomyces spp
Systematics. Structure, properties and multiplication. Genetics
TomA
TxtA
TxtC
Title Genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada
URI https://dx.doi.org/10.1016/j.syapm.2008.09.002
https://www.ncbi.nlm.nih.gov/pubmed/18947953
https://search.proquest.com/docview/20737378
https://search.proquest.com/docview/69827452
Volume 31
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