Profiling the mRNA and miRNA in Peripheral Blood Mononuclear Cells in Subjects with Active Tuberculosis

• Published in: Infection and drug resistance Vol. 13; pp. 4223 - 4234
• Main Authors: Cao, Dan, Wang, Ju, Ji, Zhongkang, Shangguan, Yanwan, Guo, Wanru, Feng, Xuewen, Xu, Kaijin, Yang, Jiezuan
• Format: Journal Article
• Language: English
• Published: New Zealand Dove Medical Press Limited 01.01.2020; Taylor & Francis Ltd; Dove
• Subjects: BCG; BCG vaccines; Bioinformatics; Biomarkers; Comparative analysis; Cytomegalovirus; Development and progression; Differential diagnosis; Gene expression; Genes; Hydrogen sulfide; Infections; Leukocytes (mononuclear); MAP kinase; Medical diagnosis; Messenger RNA; MicroRNA; MicroRNAs; miRNA; Molecular modelling; Next-generation sequencing; Original Research; Pathogenesis; Peripheral blood mononuclear cells; Principal components analysis; Protein kinase; Protein kinases; Protein-protein interactions; Reagents; Reverse transcription; Signal transduction; Software; Statistical analysis; T cell receptors; Tuberculosis; Tumor necrosis factor; China; United States > US; miRNA; mRNA; high throughput sequencing; active tuberculosis; RT-qPCR
• ISSN: 1178-6973; 1178-6973
• DOI: 10.2147/IDR.S278705

To identify candidate hub genes and miRNAs associated with active tuberculosis (ATB) and reveal the potential molecular mechanisms of disease progression. The expression of mRNA and miRNA was evaluated in peripheral blood mononuclear cells (PBMC) from 4 ATB patients and 4 healthy donors (HD) using high throughput sequencing (HTS) and bioinformatics analysis. Moreover, differentially expressed miRNAs were validated with 35 ATB patients and 35 HDs using reverse transcription quantitative real-time PCR (RT-qPCR). A total of 2658 significantly differentially expressed genes (DEG) including 1415 up-regulated genes and 1243 down-regulated genes were identified in the ATB group compared with HDs, and the DEGs enriched in immune-related pathways, especially in TNF signaling pathway, cytokine-cytokine receptor interaction, mitogen-activated protein kinase (MAPK) signaling pathways and tuberculosis. Additionally, 10 hub genes were acquired according to protein-protein interaction (PPI) analysis of DEGs. Moreover, 26 differentially expressed miRNAs were found in ATB group compared with HDs. Furthermore, RT-qPCR results showed that hsa-miR-23a-5p (P=0.0106), hsa-miR-183-5p (P=0.0027), hsa-miR-193a-5p (P=0.0021) and hsa-miR-941(P=0.0001) were significantly increased in the ATB patients compared with HD group, and the hsa-miR-16-1-3p was significantly decreased (P=0.0032). Our research provided a characteristic profile of mRNAs and miRNAs expressed in ATB subjects, and 10 hub genes related with ATB were found, which will contribute to explore the role of miRNAs and hub genes in the pathogenesis of ATB, and improve the ability of differential diagnosis and treatment for the disease.