Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov

Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 T and 573) and respiratory tracts of marmots (strains 1318 T and 1311). The 16S rRNA gene sequencing revealed that strains 546 T and 573 were 97.8% identical to Roseomonas wen...

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Published inThe journal of microbiology Vol. 60; no. 2; pp. 137 - 146
Main Authors Zhu, Wentao, Zhou, Juan, Lu, Shan, Yang, Jing, Lai, Xin-He, Jin, Dong, Pu, Ji, Huang, Yuyuan, Liu, Liyun, Li, Zhenjun, Xu, Jianguo
Format Journal Article
LanguageEnglish
Published Seoul The Microbiological Society of Korea 01.02.2022
Springer Nature B.V
한국미생물학회
Subjects
Animals
Bacterial Typing Techniques
Base Composition
Biomedical and Life Sciences
Cardiolipin
Cardiolipins - analysis
DNA, Bacterial
Gene sequencing
Life Sciences
Lipids
Marmota - microbiology
Methylobacteriaceae - cytology
Methylobacteriaceae - genetics
Methylobacteriaceae - isolation & purification
Microbial Systematics and Evolutionary Microbiology
Microbiology
New species
Nucleotides
Phosphatidylethanolamine
Phosphatidylethanolamines - analysis
Phylogenetics
Phylogeny
Quinones
Respiratory tract
RNA, Ribosomal, 16S
rRNA 16S
Sequence Analysis, DNA
Strains (organisms)
Ticks - microbiology
생물학
Qinghai-Tibet plateau
marmot
tick
Roseomonas marmotae
Roseomonas haemaphysalidis
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Abstract Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 T and 573) and respiratory tracts of marmots (strains 1318 T and 1311). The 16S rRNA gene sequencing revealed that strains 546 T and 573 were 97.8% identical to Roseomonas wenyumeiae Z23 T , whereas strains 1311 and 1318 T were 98.3% identical to Roseomonas ludipueritiae DSM 14915 T . In addition, a 98.0% identity was observed between strains 546 T and 1318 T . Phylogenetic and phylogenomic analyses revealed that strains 546 T and 573 clustered with R. wenyumeiae Z23 T , whereas strains 1311 and 1318 T grouped with R. ludipueritiae DSM 14915 T . The average nucleotide identity between our isolates and members of the genus Roseomonas was below 95%. The genomic G+C content of strains 546 T and 1318 T was 70.9% and 69.3%, respectively. Diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE) were the major polar lipids, with Q-10 as the predominant respiratory quinone. According to all genotypic, phenotypic, phylogenetic, and phylogenomic analyses, the four strains represent two novel species of the genus Roseomonas , for which the names Roseomonas haemaphysalidis sp. nov. and Roseomonas marmotae sp. nov. are proposed, with 546 T (= GDMCC 1.1780 T = JCM 34187 T ) and 1318 T (= GDMCC 1.1781 T = JCM 34188 T ) as type strains, respectively.
AbstractList Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 T and 573) and respiratory tracts of marmots (strains 1318 T and 1311). The 16S rRNA gene sequencing revealed that strains 546 T and 573 were 97.8% identical to Roseomonas wenyumeiae Z23 T , whereas strains 1311 and 1318 T were 98.3% identical to Roseomonas ludipueritiae DSM 14915 T . In addition, a 98.0% identity was observed between strains 546 T and 1318 T . Phylogenetic and phylogenomic analyses revealed that strains 546 T and 573 clustered with R. wenyumeiae Z23 T , whereas strains 1311 and 1318 T grouped with R. ludipueritiae DSM 14915 T . The average nucleotide identity between our isolates and members of the genus Roseomonas was below 95%. The genomic G+C content of strains 546 T and 1318 T was 70.9% and 69.3%, respectively. Diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE) were the major polar lipids, with Q-10 as the predominant respiratory quinone. According to all genotypic, phenotypic, phylogenetic, and phylogenomic analyses, the four strains represent two novel species of the genus Roseomonas , for which the names Roseomonas haemaphysalidis sp. nov. and Roseomonas marmotae sp. nov. are proposed, with 546 T (= GDMCC 1.1780 T = JCM 34187 T ) and 1318 T (= GDMCC 1.1781 T = JCM 34188 T ) as type strains, respectively.
Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546T and 573) and respiratory tracts of marmots (strains 1318T and 1311). The 16S rRNA gene sequencing revealed that strains 546T and 573 were 97.8% identical to Roseomonas wenyumeiae Z23T, whereas strains 1311 and 1318T were 98.3% identical to Roseomonas ludipueritiae DSM 14915T. In addition, a 98.0% identity was observed between strains 546T and 1318T. Phylogenetic and phylogenomic analyses revealed that strains 546T and 573 clustered with R. wenyumeiae Z23T, whereas strains 1311 and 1318T grouped with R. ludipueritiae DSM 14915T. The average nucleotide identity between our isolates and members of the genus Roseomonas was below 95%. The genomic G+C content of strains 546T and 1318T was 70.9% and 69.3%, respectively. Diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE) were the major polar lipids, with Q-10 as the predominant respiratory quinone. According to all genotypic, phenotypic, phylogenetic, and phylogenomic analyses, the four strains represent two novel species of the genus Roseomonas, for which the names Roseomonas haemaphysalidis sp. nov. and Roseomonas marmotae sp. nov. are proposed, with 546T (= GDMCC 1.1780T = JCM 34187T) and 1318T (= GDMCC 1.1781T = JCM 34188T) as type strains, respectively. KCI Citation Count: 0
Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 and 573) and respiratory tracts of marmots (strains 1318 and 1311). The 16S rRNA gene sequencing revealed that strains 546 and 573 were 97.8% identical to Roseomonas wenyumeiae Z23 , whereas strains 1311 and 1318 were 98.3% identical to Roseomonas ludipueritiae DSM 14915 . In addition, a 98.0% identity was observed between strains 546 and 1318 . Phylogenetic and phylogenomic analyses revealed that strains 546 and 573 clustered with R. wenyumeiae Z23 , whereas strains 1311 and 1318 grouped with R. ludipueritiae DSM 14915 . The average nucleotide identity between our isolates and members of the genus Roseomonas was below 95%. The genomic G+C content of strains 546 and 1318 was 70.9% and 69.3%, respectively. Diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE) were the major polar lipids, with Q-10 as the predominant respiratory quinone. According to all genotypic, phenotypic, phylogenetic, and phylogenomic analyses, the four strains represent two novel species of the genus Roseomonas, for which the names Roseomonas haemaphysalidis sp. nov. and Roseomonas marmotae sp. nov. are proposed, with 546 (= GDMCC 1.1780 = JCM 34187 ) and 1318 (= GDMCC 1.1781 = JCM 34188 ) as type strains, respectively.
Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546T and 573) and respiratory tracts of marmots (strains 1318T and 1311). The 16S rRNA gene sequencing revealed that strains 546T and 573 were 97.8% identical to Roseomonas wenyumeiae Z23T, whereas strains 1311 and 1318T were 98.3% identical to Roseomonas ludipueritiae DSM 14915T. In addition, a 98.0% identity was observed between strains 546T and 1318T. Phylogenetic and phylogenomic analyses revealed that strains 546T and 573 clustered with R. wenyumeiae Z23T, whereas strains 1311 and 1318T grouped with R. ludipueritiae DSM 14915T. The average nucleotide identity between our isolates and members of the genus Roseomonas was below 95%. The genomic G+C content of strains 546T and 1318T was 70.9% and 69.3%, respectively. Diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE) were the major polar lipids, with Q-10 as the predominant respiratory quinone. According to all genotypic, phenotypic, phylogenetic, and phylogenomic analyses, the four strains represent two novel species of the genus Roseomonas, for which the names Roseomonas haemaphysalidis sp. nov. and Roseomonas marmotae sp. nov. are proposed, with 546T (= GDMCC 1.1780T = JCM 34187T) and 1318T (= GDMCC 1.1781T = JCM 34188T) as type strains, respectively.
Author Pu, Ji
Li, Zhenjun
Zhou, Juan
Yang, Jing
Zhu, Wentao
Huang, Yuyuan
Lu, Shan
Jin, Dong
Lai, Xin-He
Liu, Liyun
Xu, Jianguo
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  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention
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  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Shanghai Public Health Clinical Center, Fudan University, Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences
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  fullname: Jin, Dong
  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Shanghai Public Health Clinical Center, Fudan University, Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences
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  surname: Pu
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  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention
– sequence: 8
  givenname: Yuyuan
  surname: Huang
  fullname: Huang, Yuyuan
  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention
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  givenname: Zhenjun
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  givenname: Jianguo
  surname: Xu
  fullname: Xu, Jianguo
  email: xujianguo@icdc.cn
  organization: State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Shanghai Public Health Clinical Center, Fudan University, Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences
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Keywords Qinghai-Tibet plateau
marmot
tick
Roseomonas marmotae
Roseomonas haemaphysalidis
Language English
License 2021. The Microbiological Society of Korea.
This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
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– name: 한국미생물학회
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Snippet Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 T and 573) and respiratory tracts...
Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546 and 573) and respiratory tracts of...
Four novel Gram-negative, mesophilic, aerobic, motile, and cocci-shaped strains were isolated from tick samples (strains 546T and 573) and respiratory tracts...
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StartPage 137
SubjectTerms Animals
Bacterial Typing Techniques
Base Composition
Biomedical and Life Sciences
Cardiolipin
Cardiolipins - analysis
DNA, Bacterial
Gene sequencing
Life Sciences
Lipids
Marmota - microbiology
Methylobacteriaceae - cytology
Methylobacteriaceae - genetics
Methylobacteriaceae - isolation & purification
Microbial Systematics and Evolutionary Microbiology
Microbiology
New species
Nucleotides
Phosphatidylethanolamine
Phosphatidylethanolamines - analysis
Phylogenetics
Phylogeny
Quinones
Respiratory tract
RNA, Ribosomal, 16S
rRNA 16S
Sequence Analysis, DNA
Strains (organisms)
Ticks - microbiology
생물학
Title Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov
URI https://link.springer.com/article/10.1007/s12275-022-1428-1
https://www.ncbi.nlm.nih.gov/pubmed/34826100
https://www.proquest.com/docview/2624218066
https://search.proquest.com/docview/2604011756
https://pubmed.ncbi.nlm.nih.gov/PMC8622105
https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002807967
Volume 60
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ispartofPNX The Journal of Microbiology, 2022, 60(2), , pp.137-146
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