Structure of lactate oxidase from Enterococcus hirae revealed new aspects of active site loop function: Product‐inhibition mechanism and oxygen gatekeeper

• Published in: Protein science Vol. 31; no. 10; pp. e4434 - n/a
• Main Authors: Hiraka, Kentaro, Yoshida, Hiromi, Tsugawa, Wakako, Asano, Ryutaro, La Belle, Jeffrey T., Ikebukuro, Kazunori, Sode, Koji
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01.10.2022; Wiley Subscription Services, Inc
• Subjects: Catalytic Domain; Chains; Crystal structure; Crystallization; dehydrogenase; Enterococcus hirae; Enterococcus hirae - metabolism; Enzymes; flavin; Flavin mononucleotide; Flavin Mononucleotide - chemistry; Full‐length Paper; Full‐length Papers; Kinetics; Lactate oxidase; lactate sensor; Lactates; Lactic acid; Ligands; Liquid oxygen; l‐lactate; Mixed Function Oxygenases - chemistry; Mutants; Oxidase; Oxidation; Oxygen; Oxygen consumption; Oxygen uptake; product inhibition; Pyruvic Acid; Reaction mechanisms; Saturation mutagenesis; Structural analysis; Substrate inhibition; Triose-Phosphate Isomerase - metabolism; oxidase; product inhibition; lactate sensor; lactate oxidase; substrate inhibition; crystal structure; dehydrogenase; oxygen; flavin; l-lactate
• ISSN: 0961-8368; 1469-896X; 1469-896X
• DOI: 10.1002/pro.4434

l‐Lactate oxidase (LOx) is a flavin mononucleotide (FMN)‐dependent triose phosphate isomerase (TIM) barrel fold enzyme that catalyzes the oxidation of l‐lactate using oxygen as a primary electron acceptor. Although reductive half‐reaction mechanism of LOx has been studied by structure‐based kinetic studies, oxidative half‐reaction and substrate/product‐inhibition mechanisms were yet to be elucidated. In this study, the structure and enzymatic properties of wild‐type and mutant LOxs from Enterococcus hirae (EhLOx) were investigated. EhLOx structure showed the common TIM‐barrel fold with flexible loop region. Noteworthy observations were that the EhLOx crystal structures prepared by co‐crystallization with product, pyruvate, revealed the complex structures with “d‐lactate form ligand,” which was covalently bonded with a Tyr211 side chain. This observation provided direct evidence to suggest the product‐inhibition mode of EhLOx. Moreover, this structure also revealed a flip motion of Met207 side chain, which is located on the flexible loop region as well as Tyr211. Through a saturation mutagenesis study of Met207, one of the mutants Met207Leu showed the drastically decreased oxidase activity but maintained dye‐mediated dehydrogenase activity. The structure analysis of EhLOx Met207Leu revealed the absence of flipping in the vicinity of FMN, unlike the wild‐type Met207 side chain. Together with the simulation of the oxygen‐accessible channel prediction, Met207 may play as an oxygen gatekeeper residue, which contributes oxygen uptake from external enzyme to FMN. Three clades of LOxs are proposed based on the difference of the Met207 position and they have different oxygen migration pathway from external enzyme to active center FMN. PDB Code(s): 6M73 and 6M74;