Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species

• Published in: Genome Vol. 65; no. 8; pp. 459 - 468
• Main Authors: Moraes, Isabela R.R, Pardo, Luis Miguel, Araya-Jaime, Cristian, Wolf, Milena Regina, Yasui, George Shigueki, J. Solano-Iguaran, Jaiber, Romagnoli, Graziela Gorete, Alevi, Kaio Cesar Chaboli, Castilho, Antonio Leao
• Format: Journal Article
• Language: English
• Published: Ottawa NRC Research Press 01.08.2022; Canadian Science Publishing NRC Research Press
• Subjects: Analysis; Animals; Caridea; Crustacea; Crustaceans; Decapoda; DNA; Ecological effects; Flow cytometry; Genetic aspects; Genomes; Geography; Identification and classification; Life history; Phylogeny; Shrimps; Synalpheus; Synalpheus apioceros; Synalpheus scaphoceris; Variation; Brazil; Chile
• ISSN: 0831-2796; 1480-3321
• DOI: 10.1139/gen-2022-0015

Genome size (GS) or DNA nuclear content is considered a useful index for making inferences about evolutionary models and life history in animals, including taxonomic, biogeographical, and ecological scenarios. However, patterns of GS variation and their causes in crustaceans are still poorly understood. This study aimed to describe the GS of five Neotropical Synalpheus non-gambarelloides shrimps (S. apioceros, S. minus, S. brevicarpus, S. fritzmueller, and S. scaphoceris) and compare the C-values of all Caridea infraorder in terms of geography and phylogenetics. All animals were sampled in the coast of Sao Paulo State, Brazil, and GS was assessed by flow cytometry analysis (FCA). The C-values ranged from 7.89 pg in S. apioceros to 12.24 pg in S. scaphoceris. Caridean shrimps had higher GS than other Decapoda crustaceans. The results reveal a tendency of obtaining larger genomes in species with direct development in Synalpheus shrimps. In addition, a tendency of positive biogeographical (latitudinal) correlation with Caridea infraorder was also observed. This study provides remarkable and new protocol for FCA (using gating strategy for the analysis), which led to the discovery of new information regarding GS of caridean shrimps, especially for Neotropical Synalpheus, which represents the second-largest group in the Caridea infraorder.