Statistical analysis of comparative tumor growth repeated measures experiments in the ovarian cancer patient derived xenograft (PDX) setting

• Published in: Scientific reports Vol. 11; no. 1; pp. 8076 - 15
• Main Authors: Oberg, Ann L, Heinzen, Ethan P, Hou, Xiaonan, Al Hilli, Mariam M, Hurley, Rachel M, Wahner Hendrickson, Andrea E, Goergen, Krista M, Larson, Melissa C, Becker, Marc A, Eckel-Passow, Jeanette E, Maurer, Matthew J, Kaufmann, Scott H, Haluska, Paul, Weroha, S John
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 13.04.2021; Nature Publishing Group UK; Nature Portfolio
• Subjects: Animals; Cancer; Cell Line, Tumor; Disease Models, Animal; Female; Humans; Mathematical models; Ovarian cancer; Ovarian Neoplasms; Regression analysis; Statistical analysis; Statistical models; Tumor Burden; Tumors; Within-subjects design; Xenograft Model Antitumor Assays; Xenografts
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-021-87470-x

Repeated measures studies are frequently performed in patient-derived xenograft (PDX) models to evaluate drug activity or compare effectiveness of cancer treatment regimens. Linear mixed effects regression models were used to perform statistical modeling of tumor growth data. Biologically plausible structures for the covariation between repeated tumor burden measurements are explained. Graphical, tabular, and information criteria tools useful for choosing the mean model functional form and covariation structure are demonstrated in a Case Study of five PDX models comparing cancer treatments. Power calculations were performed via simulation. Linear mixed effects regression models applied to the natural log scale were shown to describe the observed data well. A straight growth function fit well for two PDX models. Three PDX models required quadratic or cubic polynomial (time squared or cubed) terms to describe delayed tumor regression or initial tumor growth followed by regression. Spatial(power), spatial(power) + RE, and RE covariance structures were found to be reasonable. Statistical power is shown as a function of sample size for different levels of variation. Linear mixed effects regression models provide a unified and flexible framework for analysis of PDX repeated measures data, use all available data, and allow estimation of tumor doubling time.