Type 1 diabetes in pregnancy is associated with distinct changes in the composition and function of the gut microbiome

• Published in: Microbiome Vol. 9; no. 1; pp. 167 - 21
• Main Authors: Roth-Schulze, Alexandra J, Penno, Megan A S, Ngui, Katrina M, Oakey, Helena, Bandala-Sanchez, Esther, Smith, Alannah D, Allnutt, Theo R, Thomson, Rebecca L, Vuillermin, Peter J, Craig, Maria E, Rawlinson, William D, Davis, Elizabeth A, Harris, Mark, Soldatos, Georgia, Colman, Peter G, Wentworth, John M, Haynes, Aveni, Barry, Simon C, Sinnott, Richard O, Morahan, Grant, Bediaga, Naiara G, Smyth, Gordon K, Papenfuss, Anthony T, Couper, Jennifer J, Harrison, Leonard C
• Format: Journal Article
• Language: English
• Published: England BioMed Central 06.08.2021; BMC
• Subjects: Datasets; Diabetes; Diabetes mellitus (insulin dependent); Diabetes Mellitus, Type 1 - microbiology; Digestive system; Digestive tract; Environmental conditions; Fatty acid-binding protein; Fatty acids; Feces; Female; Fetuses; Gastrointestinal Microbiome - genetics; Gene expression; Gut; Humans; Inflammation; Insulin; Intestinal microflora; Intestine; Intestines; Lipopolysaccharides; Metagenome; Metagenomics; Microbiome; Microbiomes; Microbiota; Pregnancy; Pregnancy complications; Pregnancy in Diabetics - microbiology; Quantitative PCR; Sensitivity analysis; Taxonomy; Type 1 diabetes; Womens health; Pregnancy; Metagenomics; Type 1 diabetes; Gut; Inflammation markers; Quantitative PCR; Microbiome
• ISSN: 2049-2618; 2049-2618
• DOI: 10.1186/s40168-021-01104-y

The gut microbiome changes in response to a range of environmental conditions, life events and disease states. Pregnancy is a natural life event that involves major physiological adaptation yet studies of the microbiome in pregnancy are limited and their findings inconsistent. Pregnancy with type 1 diabetes (T1D) is associated with increased maternal and fetal risks but the gut microbiome in this context has not been characterized. By whole metagenome sequencing (WMS), we defined the taxonomic composition and function of the gut bacterial microbiome across 70 pregnancies, 36 in women with T1D. Women with and without T1D exhibited compositional and functional changes in the gut microbiome across pregnancy. Profiles in women with T1D were distinct, with an increase in bacteria that produce lipopolysaccharides and a decrease in those that produce short-chain fatty acids, especially in the third trimester. In addition, women with T1D had elevated concentrations of fecal calprotectin, a marker of intestinal inflammation, and serum intestinal fatty acid-binding protein (I-FABP), a marker of intestinal epithelial damage. Women with T1D exhibit a shift towards a more pro-inflammatory gut microbiome during pregnancy, associated with evidence of intestinal inflammation. These changes could contribute to the increased risk of pregnancy complications in women with T1D and are potentially modifiable by dietary means. Video abstract.