Quantification of biological nitrogen fixation by Mo-independent complementary nitrogenases in environmental samples with low nitrogen fixation activity

• Published in: Scientific reports Vol. 12; no. 1; p. 22011
• Main Authors: Haynes, Shannon J, Darnajoux, Romain, Han, Eunah, Oleynik, Sergey, Zimble, Ezra, Zhang, Xinning
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 20.12.2022; Nature Publishing Group UK; Nature Portfolio
• Subjects: Acetylene reduction; Alkynes; Cryptogams; Ethylene; Ethylenes; Fractionation; Gas chromatography; Isoforms; Leaf litter; Mass spectrometry; Mass spectroscopy; Molybdenum; Nitrogen; Nitrogen cycle; Nitrogen Fixation; Nitrogenase; Nitrogenase - metabolism; Stable isotopes; Vanadium
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-022-24860-9

Biological nitrogen fixation (BNF) by canonical molybdenum and complementary vanadium and iron-only nitrogenase isoforms is the primary natural source of newly fixed nitrogen. Understanding controls on global nitrogen cycling requires knowledge of the isoform responsible for environmental BNF. The isotopic acetylene reduction assay (ISARA), which measures carbon stable isotope ( C/ C) fractionation between ethylene and acetylene in acetylene reduction assays, is one of the few methods that can quantify isoform-specific BNF fluxes. Application of classical ISARA has been challenging because environmental BNF activity is often too low to generate sufficient ethylene for isotopic analyses. Here we describe a high sensitivity method to measure ethylene δ C by in-line coupling of ethylene preconcentration to gas chromatography-combustion-isotope ratio mass spectrometry (EPCon-GC-C-IRMS). Ethylene requirements in samples with 10% v/v acetylene are reduced from > 500 to ~ 20 ppmv (~ 2 ppmv with prior offline acetylene removal). To increase robustness by reducing calibration error, single nitrogenase-isoform Azotobacter vinelandii mutants and environmental sample assays rely on a common acetylene source for ethylene production. Application of the Low BNF activity ISARA (LISARA) method to low nitrogen-fixing activity soils, leaf litter, decayed wood, cryptogams, and termites indicates complementary BNF in most sample types, calling for additional studies of isoform-specific BNF.