3D genomics and its applications in precision medicine

• Published in: Cellular & molecular biology letters Vol. 28; no. 1; p. 19
• Main Authors: Chen, Mengjie, Liu, Xingyu, Liu, Qingyou, Shi, Deshun, Li, Hui
• Format: Journal Article
• Language: English
• Published: England BioMed Central 06.03.2023; BMC
• Subjects: 3D genomics; Animals; Binding sites; Biology; Chromatin; Chromatin - genetics; Chromatin conformation; Chromosomes; Conformation; DNA biosynthesis; Gene expression; Gene expression regulation; Gene regulation; Genetic engineering; Genomes; Genomics; Hi-C; Organisms; Precision biology; Precision Medicine; Proteins; Recombination; Review Letter; Technology; 3D genomics; Gene expression regulation; Precision medicine; Chromatin conformation; Hi-C; Precision biology
• ISSN: 1689-1392; 1425-8153; 1689-1392
• DOI: 10.1186/s11658-023-00428-x

Three-dimensional (3D) genomics is an emerging discipline that studies the three-dimensional structure of chromatin and the three-dimensional and functions of genomes. It mainly studies the three-dimensional conformation and functional regulation of intranuclear genomes, such as DNA replication, DNA recombination, genome folding, gene expression regulation, transcription factor regulation mechanism, and the maintenance of three-dimensional conformation of genomes. Self-chromosomal conformation capture (3C) technology has been developed, and 3D genomics and related fields have developed rapidly. In addition, chromatin interaction analysis techniques developed by 3C technologies, such as paired-end tag sequencing (ChIA-PET) and whole-genome chromosome conformation capture (Hi-C), enable scientists to further study the relationship between chromatin conformation and gene regulation in different species. Thus, the spatial conformation of plant, animal, and microbial genomes, transcriptional regulation mechanisms, interaction patterns of chromosomes, and the formation mechanism of spatiotemporal specificity of genomes are revealed. With the help of new experimental technologies, the identification of key genes and signal pathways related to life activities and diseases is sustaining the rapid development of life science, agriculture, and medicine. In this paper, the concept and development of 3D genomics and its application in agricultural science, life science, and medicine are introduced, which provides a theoretical basis for the study of biological life processes.