Influence of image segmentation on one-dimensional fluid dynamics predictions in the mouse pulmonary arteries

• Published in: Journal of the Royal Society interface Vol. 16; no. 159; p. 20190284
• Main Authors: Colebank, Mitchel J., Paun, L. Mihaela, Qureshi, M. Umar, Chesler, Naomi, Husmeier, Dirk, Olufsen, Mette S., Fix, Laura Ellwein
• Format: Journal Article
• Language: English
• Published: England The Royal Society 31.10.2019
• Subjects: Life Sciences–Mathematics interface; uncertainty quantification; image segmentation; pulmonary circulation; fluid dynamics; haemodynamics
• ISSN: 1742-5689; 1742-5662; 1742-5662
• DOI: 10.1098/rsif.2019.0284

Computational fluid dynamics (CFD) models are emerging tools for assisting in diagnostic assessment of cardiovascular disease. Recent advances in image segmentation have made subject-specific modelling of the cardiovascular system a feasible task, which is particularly important in the case of pulmonary hypertension, requiring a combination of invasive and non-invasive procedures for diagnosis. Uncertainty in image segmentation propagates to CFD model predictions, making the quantification of segmentation-induced uncertainty crucial for subject-specific models. This study quantifies the variability of one-dimensional CFD predictions by propagating the uncertainty of network geometry and connectivity to blood pressure and flow predictions. We analyse multiple segmentations of a single, excised mouse lung using different pre-segmentation parameters. A custom algorithm extracts vessel length, vessel radii and network connectivity for each segmented pulmonary network. Probability density functions are computed for vessel radius and length and then sampled to propagate uncertainties to haemodynamic predictions in a fixed network. In addition, we compute the uncertainty of model predictions to changes in network size and connectivity. Results show that variation in network connectivity is a larger contributor to haemodynamic uncertainty than vessel radius and length.