Deep Neural Network-Based Automatic Dicentric Chromosome Detection Using a Model Pretrained on Common Objects

• Published in: Diagnostics (Basel) Vol. 13; no. 20; p. 3191
• Main Authors: Kim, Kangsan, Kim, Kwang Seok, Jang, Won Il, Jang, Seongjae, Hwang, Gil Tae, Woo, Sang-Keun
• Format: Journal Article
• Language: English
• Published: Basel MDPI AG 01.10.2023; MDPI
• Subjects: Algorithms; Automation; chromosome metaphases image; Chromosomes; cytogenetic dosimetry; Cytogenetics; deep learning; dicentric chromosome assay; Dosimetry; Neural networks; object detection; Radiation; Telematics; you only look once; South Korea
• ISSN: 2075-4418; 2075-4418
• DOI: 10.3390/diagnostics13203191

Dicentric chromosome assay (DCA) is one of the cytogenetic dosimetry methods where the absorbed dose is estimated by counting the number of dicentric chromosomes, which is a major radiation-induced change in DNA. However, DCA is a time-consuming task and requires technical expertise. In this study, a neural network was applied for automating the DCA. We used YOLOv5, a one-stage detection algorithm, to mitigate these limitations by automating the estimation of the number of dicentric chromosomes in chromosome metaphase images. YOLOv5 was pretrained on common object datasets. For training, 887 augmented chromosome images were used. We evaluated the model using validation and test datasets with 380 and 300 images, respectively. With pretrained parameters, the trained model detected chromosomes in the images with a maximum F1 score of 0.94 and a mean average precision (mAP) of 0.961. Conversely, when the model was randomly initialized, the training performance decreased, with a maximum F1 score and mAP of 0.82 and 0.873%, respectively. These results confirm that the model could effectively detect dicentric chromosomes in an image. Consequently, automatic DCA is expected to be conducted based on deep learning for object detection, requiring a relatively small amount of chromosome data for training using the pretrained network.