Novel Semisynthetic Derivatives of Bile Acids as Effective Tyrosyl-DNA Phosphodiesterase 1 Inhibitors

• Published in: Molecules (Basel, Switzerland) Vol. 23; no. 3; p. 679
• Main Authors: Salomatina, Oksana, Popadyuk, Irina, Zakharenko, Alexandra, Zakharova, Olga, Fadeev, Dmitriy, Komarova, Nina, Reynisson, Jóhannes, Arabshahi, H., Chand, Raina, Volcho, Konstantin, Salakhutdinov, Nariman, Lavrik, Olga
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 17.03.2018; MDPI
• Subjects: amide; Bile; Bile Acids and Salts - chemical synthesis; Bile Acids and Salts - chemistry; Bile Acids and Salts - pharmacology; Binding Sites; cancer; chenodeoxycholic acid; deoxycholic acid; Deoxyribonucleic acid; DNA; DNA repair; Drug Evaluation, Preclinical; Enzymes; HCT116 Cells; Humans; MCF-7 Cells; Molecular Docking Simulation; molecular modelling; Niacinamide - analogs & derivatives; Niacinamide - chemical synthesis; Niacinamide - chemistry; Niacinamide - pharmacology; Phosphodiesterase Inhibitors - chemical synthesis; Phosphodiesterase Inhibitors - chemistry; Phosphodiesterase Inhibitors - pharmacology; Phosphoric Diester Hydrolases - metabolism; Tdp1 inhibitor; Tryptamines - chemical synthesis; Tryptamines - chemistry; Tryptamines - pharmacology; tumor; ursodeoxycholic acid; virtual screening; Tdp1 inhibitor; amide; ursodeoxycholic acid; virtual screening; molecular modelling; tumor; cancer; deoxycholic acid; chenodeoxycholic acid
• ISSN: 1420-3049; 1420-3049
• DOI: 10.3390/molecules23030679

An Important task in the treatment of oncological and neurodegenerative diseases is the search for new inhibitors of DNA repair system enzymes. Tyrosyl-DNA phosphodiesterase 1 (Tdp1) is one of the DNA repair system enzymes involved in the removal of DNA damages caused by topoisomerase I inhibitors. Thus, reducing the activity of Tdp1 can increase the effectiveness of currently used anticancer drugs. We describe here a new class of semisynthetic small molecule Tdp1 inhibitors based on the bile acid scaffold that were originally identified by virtual screening. The influence of functional groups of bile acids (hydroxy and acetoxy groups in the steroid framework and amide fragment in the side chain) on inhibitory activity was investigated. In vitro studies demonstrate the ability of the semisynthetic derivatives to effectively inhibit Tdp1 with IC50 up to 0.29 µM. Furthermore, an excellent fit is realized for the ligands when docked into the active site of the Tdp1 enzyme.