Insights from bioinformatics analysis reveal that lipopolysaccharide induces activation of chemokine-related signaling pathways in human nasal epithelial cells

• Published in: Scientific reports Vol. 14; no. 1; p. 7672
• Main Authors: Tan, Shaolin, Gu, Yuelong, Zhu, Ying, Luo, Chunyu, Li, Zhipeng, Lin, Hai, Zhang, Weitian
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 01.04.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/114; 631/114/2163; 631/114/2184; 631/114/2403; 631/114/2404; Bioinformatics; Cell culture; Chemokines; Chemokines - genetics; Computational Biology - methods; Epithelial Cells; Gene Expression Profiling - methods; Gene set enrichment analysis; Humanities and Social Sciences; Humans; Immune response; Inflammation; Lipopolysaccharides; Lipopolysaccharides - pharmacology; multidisciplinary; Science; Science (multidisciplinary); Signal transduction; Signal Transduction - genetics; Transcriptome; Transcriptomes
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-024-58317-y

Lipopolysaccharide (LPS) is known to elicit a robust immune response. This study aimed to investigate the impact of LPS on the transcriptome of human nasal epithelial cells (HNEpC). HNEpC were cultured and stimulated with LPS (1 μg/mL) or an equivalent amount of normal culture medium. Subsequently, total RNA was extracted, purified, and sequenced using next-generation RNA sequencing technology. Differentially expressed genes (DEGs) were identified and subjected to functional enrichment analysis. A protein–protein interaction (PPI) network of DEGs was constructed, followed by Ingenuity Pathway Analysis (IPA) to identify molecular pathways influenced by LPS exposure on HNEpC. Validation of key genes was performed using quantitative real-time PCR (qRT-PCR). A total of 97 DEGs, comprising 48 up-regulated genes and 49 down-regulated genes, were identified. Results from functional enrichment analysis, PPI, and IPA indicated that DEGs were predominantly enriched in chemokine-related signaling pathways. Subsequent qRT-PCR validation demonstrated significant upregulation of key genes in these pathways in LPS-treated HNEpC compared to control cells. In conclusion, LPS intervention profoundly altered the transcriptome of HNEpC, potentially exacerbating inflammatory responses through the activation of chemokine-related signaling pathways.