Chromosome-level genome assembly of Platycarya strobilacea

• Published in: Scientific data Vol. 11; no. 1; p. 269
• Main Authors: Zhou, Huijuan, Zhang, Xuedong, Liu, Hengzhao, Ma, jiayu, Hao, Fan, Ye, Hang, Wang, Yaling, Zhang, Shuoxin, Yue, Ming, Zhao, Peng
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 05.03.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/158/2464; 631/449/2669; Annotations; Asia, Eastern; Biological Evolution; Chromosomes; Data Descriptor; Databases, Genetic; Deciduous trees; Endemic species; Females; Genes; Genome, Plant; Genomes; Humanities and Social Sciences; Juglandaceae; Juglandaceae - genetics; Leaves; Morphology; multidisciplinary; Phylogenetics; Phylogeny; Pipelines; Platycarya strobilacea; Science; Science (multidisciplinary); Software; Trees; Asia, Eastern
• ISSN: 2052-4463; 2052-4463
• DOI: 10.1038/s41597-024-03107-4

Platycarya strobilacea belongs to the walnut family (Juglandaceae), is commonly known as species endemic to East Asia, and is an ecologically important, wind pollinated, woody deciduous tree. To facilitate this ancient tree for the ecological value and conservation of this ancient tree, we report a new high-quality genome assembly of P. strobilacea . The genome size was 677.30 Mb, with a scaffold N50 size of 45,791,698 bp, and 98.43% of the assembly was anchored to 15 chromosomes. We annotated 32,246 protein-coding genes in the genome, of which 96.30% were functionally annotated in six databases. This new high-quality assembly of P. strobilacea provide valuable resource for the phylogenetic and evolutionary analysis of the walnut family and angiosperm.