Total amino acid stabilization during cell-free protein synthesis reactions

• Published in: Journal of biotechnology Vol. 123; no. 2; pp. 193 - 203
• Main Authors: Calhoun, Kara A., Swartz, James R.
• Format: Journal Article
• Language: English
• Published: Lausanne Elsevier B.V 17.05.2006; Amsterdam Elsevier; New York, NY
• Subjects: Amino acid stabilization; Amino Acids - genetics; Amino Acids - metabolism; Biological and medical sciences; Biotechnology; Cell extract; Cell-free biology; Cell-free protein synthesis; Cell-Free System; Escherichia coli; Escherichia coli - genetics; Escherichia coli - metabolism; Escherichia coli Proteins - biosynthesis; Escherichia coli Proteins - genetics; Fundamental and applied biological sciences. Psychology; Protein Biosynthesis - physiology; Protein Engineering - methods; Cell extract; Amino acid stabilization; Cell-free biology; Cell-free protein synthesis; Escherichia coli; Stabilization; Protein synthesis; Aminoacid; Cell biology; Bacteria; Enterobacteriaceae
• ISSN: 0168-1656; 1873-4863
• DOI: 10.1016/j.jbiotec.2005.11.011

Limitations in amino acid supply have been recognized as a substantial problem in cell-free protein synthesis reactions. Although enzymatic inhibitors and fed-batch techniques have been beneficial, the most robust way to stabilize amino acids is to remove the responsible enzymatic activities by genetically modifying the source strain used for cell extract preparation. Previous work showed this was possible for arginine, serine, and tryptophan, but cysteine degradation remained a major limitation in obtaining high protein synthesis yields. Through radiolabel techniques, we confirmed that cysteine degradation was caused by the activity of glutamate-cysteine ligase (gene gshA) in the cell extract. Next, we created Escherichia coli strain KC6 that combines a gshA deletion with previously described deletions for arginine, serine, and tryptophan stabilization. Strain KC6 grows well, and active cell extract can be produced from it for cell-free protein synthesis reactions. The extract from strain KC6 maintains stable amino acid concentrations of all 20 amino acids in a 3-h batch reaction. Yields for three different proteins improved 75–250% relative to cell-free expression using the control extract.