SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways

• Published in: Molecular cell Vol. 50; no. 6; pp. 919 - 930
• Main Authors: Park, Jeongsoon, Chen, Yue, Tishkoff, Daniel X., Peng, Chao, Tan, Minjia, Dai, Lunzhai, Xie, Zhongyu, Zhang, Yi, Zwaans, Bernadette M.M., Skinner, Mary E., Lombard, David B., Zhao, Yingming
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 27.06.2013
• Subjects: Acetylation; Amino Acid Sequence; Animals; Cell Respiration; Cells, Cultured; Consensus Sequence; fatty acid metabolism; Glycosylation; Kinetics; lysine; Lysine - metabolism; mammals; Metabolic Networks and Pathways; Mice; Mice, Knockout; Mitochondria - enzymology; Molecular Sequence Annotation; nuclear proteins; post-translational modification; Protein Interaction Maps; Protein Processing, Post-Translational; Protein Transport; proteins; Proteome - metabolism; pyruvate dehydrogenase (lipoamide); Pyruvate Dehydrogenase Complex - metabolism; Sirtuins - genetics; Sirtuins - metabolism; succinate dehydrogenase (quinone); Succinate Dehydrogenase - metabolism; tricarboxylic acid cycle
• ISSN: 1097-2765; 1097-4164
• DOI: 10.1016/j.molcel.2013.06.001

Protein function is regulated by diverse posttranslational modifications. The mitochondrial sirtuin SIRT5 removes malonyl and succinyl moieties from target lysines. The spectrum of protein substrates subject to these modifications is unknown. We report systematic profiling of the mammalian succinylome, identifying 2,565 succinylation sites on 779 proteins. Most of these do not overlap with acetylation sites, suggesting differential regulation of succinylation and acetylation. Our analysis reveals potential impacts of lysine succinylation on enzymes involved in mitochondrial metabolism; e.g., amino acid degradation, the tricarboxylic acid cycle (TCA) cycle, and fatty acid metabolism. Lysine succinylation is also present on cytosolic and nuclear proteins; indeed, we show that a substantial fraction of SIRT5 is extramitochondrial. SIRT5 represses biochemical activity of, and cellular respiration through, two protein complexes identified in our analysis, pyruvate dehydrogenase complex and succinate dehydrogenase. Our data reveal widespread roles for lysine succinylation in regulating metabolism and potentially other cellular functions. •Lysine succinylation is a posttranslational modification regulated by SIRT5•We profile lysine succinylation in mammalian fibroblasts and liver tissue•Succinylation is present on diverse mitochondrial and nonmitochondrial proteins•SIRT5 suppresses pyruvate dehydrogenase complex and succinate dehydrogenase