Precise sequential DNA ligation on a solid substrate: solid-based rapid sequential ligation of multiple DNA molecules

• Published in: DNA research Vol. 20; no. 6; pp. 583 - 592
• Main Authors: Takita, Eiji, Kohda, Katsunori, Tomatsu, Hajime, Hanano, Shigeru, Moriya, Kanami, Hosouchi, Tsutomu, Sakurai, Nozomu, Suzuki, Hideyuki, Shinmyo, Atsuhiko, Shibata, Daisuke
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.12.2013
• Subjects: Arabidopsis - genetics; Cloning, Molecular - methods; DNA - chemistry; DNA - genetics; DNA, Plant - chemistry; DNA, Plant - genetics; Genetic Vectors; Plasmids; functional genomics; DNA ligation; cloning; multiple DNA fragment assembly
• ISSN: 1340-2838; 1756-1663
• DOI: 10.1093/dnares/dst032

Ligation, the joining of DNA fragments, is a fundamental procedure in molecular cloning and is indispensable to the production of genetically modified organisms that can be used for basic research, the applied biosciences, or both. Given that many genes cooperate in various pathways, incorporating multiple gene cassettes in tandem in a transgenic DNA construct for the purpose of genetic modification is often necessary when generating organisms that produce multiple foreign gene products. Here, we describe a novel method, designated PRESSO (precise sequential DNA ligation on a solid substrate), for the tandem ligation of multiple DNA fragments. We amplified donor DNA fragments with non-palindromic ends, and ligated the fragment to acceptor DNA fragments on solid beads. After the final donor DNA fragments, which included vector sequences, were joined to the construct that contained the array of fragments, the ligation product (the construct) was thereby released from the beads via digestion with a rare-cut meganuclease; the freed linear construct was circularized via an intra-molecular ligation. PRESSO allowed us to rapidly and efficiently join multiple genes in an optimized order and orientation. This method can overcome many technical challenges in functional genomics during the post-sequencing generation.