Shared Genes of PPARG and NOS2 in Alzheimer's Disease and Ulcerative Colitis Drive Macrophages and Microglia Polarization: Evidence from Bioinformatics Analysis and Following Validation

• Published in: International journal of molecular sciences Vol. 24; no. 6; p. 5651
• Main Authors: Dong, Longcong, Shen, Yuan, Li, Hongying, Zhang, Ruibin, Yu, Shuguang, Wu, Qiaofeng
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 15.03.2023; MDPI
• Subjects: Alzheimer Disease - genetics; Alzheimer's disease; Bioinformatics; Colitis, Ulcerative - genetics; Computational Biology; Gene expression; Genes; Humans; Immunofluorescence; Inflammation; Inflammatory bowel disease; Inflammatory Bowel Diseases; Macrophages; Microglia; Nitric oxide; Nitric Oxide Synthase Type II - genetics; NOS2; Parkinson's disease; Peroxisome proliferator-activated receptors; Polarization; PPAR gamma - genetics; PPARG; Reproducibility of Results; shared gene; Ulcerative colitis; PPARG; ulcerative colitis; shared gene; Alzheimer’s disease; NOS2; bioinformatics
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms24065651

Emerging evidence shows that peripheral systemic inflammation, such as inflammatory bowel disease (IBD), has a close even interaction with central nervous disorders such as Alzheimer's disease (AD). This study is designed to further clarify the relationship between AD and ulcerative colitis (UC, a subclass of IBD). The GEO database was used to download gene expression profiles for AD (GSE5281) and UC (GSE47908). Bioinformatics analysis included GSEA, KEGG pathway, Gene Ontology (GO), WikiPathways, PPI network, and hub gene identification. After screening the shared genes, qRT-PCR, Western blot, and immunofluorescence were used to verify the reliability of the dataset and further confirm the shared genes. GSEA, KEGG, GO, and WikiPathways suggested that and were identified as shared genes and hub genes by cytoHubba in AD and UC and further validated via qRT-PCR and Western blot. Our work identified and are shared genes of AD and UC. They drive macrophages and microglia heterogeneous polarization, which may be potential targets for treating neural dysfunction induced by systemic inflammation and vice versa.