Parvulin (Par14), a Peptidyl-Prolyl cis-trans Isomerase, Is a Novel rRNA Processing Factor That Evolved in the Metazoan Lineage

• Published in: Molecular & cellular proteomics Vol. 8; no. 7; pp. 1552 - 1565
• Main Authors: Fujiyama-Nakamura, Sally, Yoshikawa, Harunori, Homma, Keiichi, Hayano, Toshiya, Tsujimura-Takahashi, Teruko, Izumikawa, Keiichi, Ishikawa, Hideaki, Miyazawa, Naoki, Yanagida, Mitsuaki, Miura, Yutaka, Shinkawa, Takashi, Yamauchi, Yoshio, Isobe, Toshiaki, Takahashi, Nobuhiro
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.07.2009; American Society for Biochemistry and Molecular Biology; The American Society for Biochemistry and Molecular Biology
• Subjects: Amino Acid Sequence; Animals; Cell Line; Chromatography, Liquid; Evolution, Molecular; Humans; Macromolecular Substances - chemistry; Macromolecular Substances - metabolism; Mice; Molecular Sequence Data; NIMA-Interacting Peptidylprolyl Isomerase; Peptidylprolyl Isomerase - genetics; Peptidylprolyl Isomerase - metabolism; Protein Structure, Tertiary; Proteomics - methods; Recombinant Fusion Proteins - genetics; Recombinant Fusion Proteins - metabolism; RNA Interference; RNA Precursors - genetics; RNA Precursors - metabolism; RNA, Ribosomal - genetics; RNA, Ribosomal - metabolism; Sequence Alignment; Tandem Mass Spectrometry
• ISSN: 1535-9476; 1535-9484
• DOI: 10.1074/mcp.M900147-MCP200

Although parvulin (Par14/eukaryotic parvulin homolog), a peptidyl-prolyl cis-trans isomerase, is found associated with the preribosomal ribonucleoprotein (pre-rRNP) complexes, its roles in ribosome biogenesis remain undetermined. In this study, we describe a comprehensive proteomics analysis of the Par14-associated pre-rRNP complexes using LC-MS/MS and a knockdown analysis of Par14. Together with our previous results, we finally identified 115 protein components of the complexes, including 39 ribosomal proteins and 54 potential trans-acting factors whose yeast homologs are found in the pre-rRNP complexes formed at various stages of ribosome biogenesis. We give evidence that, although Par14 exists in both the phosphorylated and unphosphorylated forms in the cell, only the latter form is associated with the pre-40 S and pre-60 S ribosomal complexes. We also show that Par14 co-localizes with the nucleolar protein B23 during the interphase and in the spindle apparatus during mitosis and that actinomycin D treatment results in the exclusion of Par14 from the nucleolus. Finally we demonstrate that knockdown of Par14 mRNA decelerates the processing of pre-rRNA to 18 and 28 S rRNAs. We propose that Par14 is a component of the pre-rRNA complexes and functions as an rRNA processing factor in ribosome biogenesis. As the amino acid sequence of Par14 including that in the amino-terminal pre-rRNP binding region is conserved only in metazoan homologs, we suggest that its roles in ribosome biogenesis have evolved in the metazoan lineage.