A Sulfoglycolytic Entner-Doudoroff Pathway in Rhizobium leguminosarum bv. trifolii SRDI565

• Published in: Applied and environmental microbiology Vol. 86; no. 15
• Main Authors: Li, Jinling, Epa, Ruwan, Scott, Nichollas E, Skoneczny, Dominik, Sharma, Mahima, Snow, Alexander J D, Lingford, James P, Goddard-Borger, Ethan D, Davies, Gideon J, McConville, Malcolm J, Williams, Spencer J
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 20.07.2020
• Subjects: ABC transporter; Aldehyde reductase; Aldehydes; Bacteria; Bacterial Proteins - metabolism; Entner-Doudoroff pathway; Environmental Microbiology; Fructose-6-phosphate; Gluconeogenesis; Glycerol; Glycerol - metabolism; Glycolysis; Host plants; Lysates; Mannitol; Metabolism; Metabolomics; Methylglucosides - metabolism; Nitrogen fixation; Nitrogen-fixing bacteria; Nitrogenation; Phosphoglucose isomerase; Proteome - metabolism; Proteomics; Reductases; Rhizobium leguminosarum; Rhizobium leguminosarum - metabolism; Rhizosphere; Soil bacteria; Soil microorganisms; Soils; carbohydrates; metabolism; rhizobia; metabolomics; sulfur cycle; sulfoglycolysis
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/aem.00750-20

Rhizobia are nitrogen-fixing bacteria that engage in symbiotic relationships with plant hosts but can also persist as free-living bacteria in the soil and rhizosphere. Here, we show that free-living SRDI565 can grow on the sulfosugar sulfoquinovose (SQ) or the related glycoside SQ-glycerol using a sulfoglycolytic Entner-Doudoroff (sulfo-ED) pathway, resulting in production of sulfolactate (SL) as the major metabolic end product. Comparative proteomics supports the involvement of a sulfo-ED operon encoding an ABC transporter, sulfo-ED enzymes, and an SL exporter. Consistent with an oligotrophic lifestyle, proteomics data revealed little change in expression of the sulfo-ED proteins during growth on SQ versus mannitol, a result confirmed through biochemical assay of sulfoquinovosidase activity in cell lysates. Metabolomics analysis showed that growth on SQ involves gluconeogenesis to satisfy metabolic requirements for glucose-6-phosphate and fructose-6-phosphate. Metabolomics analysis also revealed the unexpected production of small amounts of sulfofructose and 2,3-dihydroxypropanesulfonate, which are proposed to arise from promiscuous activities of the glycolytic enzyme phosphoglucose isomerase and a nonspecific aldehyde reductase, respectively. The discovery of a rhizobium isolate with the ability to degrade SQ builds our knowledge of how these important symbiotic bacteria persist within soil. Sulfonate sulfur is a major form of organic sulfur in soils but requires biomineralization before it can be utilized by plants. Very little is known about the biochemical processes used to mobilize sulfonate sulfur. We show that a rhizobial isolate from soil, SRDI565, possesses the ability to degrade the abundant phototroph-derived carbohydrate sulfonate SQ through a sulfoglycolytic Entner-Doudoroff pathway. Proteomics and metabolomics demonstrated the utilization of this pathway during growth on SQ and provided evidence for gluconeogenesis. Unexpectedly, off-cycle sulfoglycolytic species were also detected, pointing to the complexity of metabolic processes within cells under conditions of sulfoglycolysis. Thus, rhizobial metabolism of the abundant sulfosugar SQ may contribute to persistence of the bacteria in the soil and to mobilization of sulfur in the pedosphere.